differences for PR #244

03-basics-factors-dataframes.md

@@ -69,7 +69,7 @@ in your analysis, and its reproducibility.
 
 :::::::::::::::::::::::::::::::::::::::::  callout
 
-## Tip: Keeping you raw data separate
+## Tip: Keep your raw data separate
 
 When you work with data in R, you are not changing the original file you
 loaded that data from. This is different than (for example) working with
@@ -497,7 +497,7 @@ These packages will be installed into "~/work/genomics-r-intro/genomics-r-intro/
 
 # Installing packages --------------------------------------------------------
 - Installing ggplot2 ...                        OK [linked from cache]
-Successfully installed 1 package in 6.1 milliseconds.
+Successfully installed 1 package in 5.7 milliseconds.
 ```
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::

config.yaml

@@ -0,0 +1,88 @@
+#------------------------------------------------------------
+# Values for this lesson.
+#------------------------------------------------------------
+
+# Which carpentry is this (swc, dc, lc, or cp)?
+# swc: Software Carpentry
+# dc: Data Carpentry
+# lc: Library Carpentry
+# cp: Carpentries (to use for instructor training for instance)
+# incubator: The Carpentries Incubator
+carpentry: 'dc'
+
+# Overall title for pages.
+title: 'Intro to R and RStudio for Genomics'
+
+# Date the lesson was created (YYYY-MM-DD, this is empty by default)
+created: '2018-03-12'
+
+# Comma-separated list of keywords for the lesson
+keywords: 'software, data, lesson, The Carpentries'
+
+# Life cycle stage of the lesson
+# possible values: pre-alpha, alpha, beta, stable
+life_cycle: 'beta'
+
+# License of the lesson materials (recommended CC-BY 4.0)
+license: 'CC-BY 4.0'
+
+# Link to the source repository for this lesson
+source: 'https://github.com/datacarpentry/genomics-r-intro'
+
+# Default branch of your lesson
+branch: 'main'
+
+# Who to contact if there are any issues
+contact: 'team@carpentries.org'
+
+# Navigation ------------------------------------------------
+#
+# Use the following menu items to specify the order of
+# individual pages in each dropdown section. Leave blank to
+# include all pages in the folder.
+#
+# Example -------------
+#
+# episodes:
+# - introduction.md
+# - first-steps.md
+#
+# learners:
+# - setup.md
+#
+# instructors:
+# - instructor-notes.md
+#
+# profiles:
+# - one-learner.md
+# - another-learner.md
+
+# Order of episodes in your lesson
+episodes: 
+- 00-introduction.Rmd
+- 01-r-basics.Rmd
+- 02-data-prelude.Rmd
+- 03-basics-factors-dataframes.Rmd
+- 04-bioconductor-vcfr.Rmd
+- 05-dplyr.Rmd
+- 06-data-visualization.Rmd
+- 07-r-help.Rmd
+
+# Information for Learners
+learners: 
+
+# Information for Instructors
+instructors: 
+
+# Learner Profiles
+profiles: 
+
+# Customisation ---------------------------------------------
+#
+# This space below is where custom yaml items (e.g. pinning
+# sandpaper and varnish versions) should live
+
+
+url: 'https://datacarpentry.github.io/genomics-r-intro'
+analytics: carpentries
+lang: en

md5sum.txt

@@ -6,7 +6,7 @@
 "episodes/00-introduction.Rmd" "23afc306d3ca75b46cbebfe21e0d060a" "site/built/00-introduction.md" "2023-11-30"
 "episodes/01-r-basics.Rmd" "a3c3f96b0da4eed5afb6359d70201f04" "site/built/01-r-basics.md" "2023-11-30"
 "episodes/02-data-prelude.Rmd" "ab2b1fd3cdaae919f9e409f713a0a8ad" "site/built/02-data-prelude.md" "2023-11-30"
-"episodes/03-basics-factors-dataframes.Rmd" "e4c6c18249ec1cf007e676f6d8cf7ed8" "site/built/03-basics-factors-dataframes.md" "2023-11-30"
+"episodes/03-basics-factors-dataframes.Rmd" "4660e67699c358bbf4aa70e5ff7b4e24" "site/built/03-basics-factors-dataframes.md" "2023-12-04"
 "episodes/04-bioconductor-vcfr.Rmd" "10eb69b4697d7ecb9695d36c0d974208" "site/built/04-bioconductor-vcfr.md" "2023-11-30"
 "episodes/05-dplyr.Rmd" "9a61d50db32811586949e7227f3c03a6" "site/built/05-dplyr.md" "2023-11-30"
 "episodes/06-data-visualization.Rmd" "d17499bf239ee3eb1a3cfbb956269d32" "site/built/06-data-visualization.md" "2023-11-30"