Simpler solution for wellplate exercise #93
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: "Receive Pull Request" | |
| on: | |
| pull_request: | |
| types: | |
| [opened, synchronize, reopened] | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test-pr: | |
| name: "Record PR number" | |
| if: ${{ github.event.action != 'closed' }} | |
| runs-on: ubuntu-latest | |
| outputs: | |
| is_valid: ${{ steps.check-pr.outputs.VALID }} | |
| steps: | |
| - name: "Record PR number" | |
| id: record | |
| if: ${{ always() }} | |
| run: | | |
| echo ${{ github.event.number }} > ${{ github.workspace }}/NR # 2022-03-02: artifact name fixed to be NR | |
| - name: "Upload PR number" | |
| id: upload | |
| if: ${{ always() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: pr | |
| path: ${{ github.workspace }}/NR | |
| - name: "Get Invalid Hashes File" | |
| id: hash | |
| run: | | |
| echo "json<<EOF | |
| $(curl -sL https://files.carpentries.org/invalid-hashes.json) | |
| EOF" >> $GITHUB_OUTPUT | |
| - name: "echo output" | |
| run: | | |
| echo "${{ steps.hash.outputs.json }}" | |
| - name: "Check PR" | |
| id: check-pr | |
| uses: carpentries/actions/check-valid-pr@main | |
| with: | |
| pr: ${{ github.event.number }} | |
| invalid: ${{ fromJSON(steps.hash.outputs.json)[github.repository] }} | |
| build-md-source: | |
| name: "Build markdown source files if valid" | |
| needs: test-pr | |
| runs-on: ubuntu-latest | |
| if: ${{ needs.test-pr.outputs.is_valid == 'true' }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RENV_PATHS_ROOT: ~/.local/share/renv/ | |
| CHIVE: ${{ github.workspace }}/site/chive | |
| PR: ${{ github.workspace }}/site/pr | |
| MD: ${{ github.workspace }}/site/built | |
| steps: | |
| - name: "Check Out Main Branch" | |
| uses: actions/checkout@v3 | |
| - name: "Check Out Staging Branch" | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: md-outputs | |
| path: ${{ env.MD }} | |
| - name: "Set up R" | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| install-r: false | |
| - name: "Set up Pandoc" | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: "Setup Lesson Engine" | |
| uses: carpentries/actions/setup-sandpaper@main | |
| with: | |
| cache-version: ${{ secrets.CACHE_VERSION }} | |
| - name: "Setup Package Cache" | |
| uses: carpentries/actions/setup-lesson-deps@main | |
| with: | |
| cache-version: ${{ secrets.CACHE_VERSION }} | |
| - name: "Validate and Build Markdown" | |
| id: build-site | |
| run: | | |
| sandpaper::package_cache_trigger(TRUE) | |
| sandpaper::validate_lesson(path = '${{ github.workspace }}') | |
| sandpaper:::build_markdown(path = '${{ github.workspace }}', quiet = FALSE) | |
| shell: Rscript {0} | |
| - name: "Generate Artifacts" | |
| id: generate-artifacts | |
| run: | | |
| sandpaper:::ci_bundle_pr_artifacts( | |
| repo = '${{ github.repository }}', | |
| pr_number = '${{ github.event.number }}', | |
| path_md = '${{ env.MD }}', | |
| path_pr = '${{ env.PR }}', | |
| path_archive = '${{ env.CHIVE }}', | |
| branch = 'md-outputs' | |
| ) | |
| shell: Rscript {0} | |
| - name: "Upload PR" | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: pr | |
| path: ${{ env.PR }} | |
| - name: "Upload Diff" | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: diff | |
| path: ${{ env.CHIVE }} | |
| retention-days: 1 | |
| - name: "Upload Build" | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: built | |
| path: ${{ env.MD }} | |
| retention-days: 1 | |
| - name: "Teardown" | |
| run: sandpaper::reset_site() | |
| shell: Rscript {0} |