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update (network/cml): refactor and files update
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networks/cml-chronic-myeloid-leukemia/article-imatinib/01-geo/cml_x_nbm-prog_geo-full.tsv
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...chronic-myeloid-leukemia/article-imatinib/01-geo/cml_x_nbm-prog_geo-significant-broad.tsv
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,147 @@ | ||
| ID Gene.symbol Gene.title log2(fold change) -log10(Pvalue) | ||
| 7894510 1.34 3.925 | ||
| 7896577 1.024 3.886 | ||
| 7896687 -1.326 4.262 | ||
| 7896690 -1.498 5.943 | ||
| 7896703 -1.162 4.282 | ||
| 7896707 -1.4 5.586 | ||
| 7896715 -1.934 4.109 | ||
| 7898623 UBXN10 UBX domain protein 10 1.132 4.625 | ||
| 7902072 1.22 4.977 | ||
| 7902074 LEPROT///LEPR leptin receptor overlapping transcript///leptin receptor 1.314 4.682 | ||
| 7902102 1.6 3.84 | ||
| 7903162 TMEM56-RWDD3///TMEM56 TMEM56-RWDD3 readthrough///transmembrane protein 56 -0.974 4.462 | ||
| 7903308 TRMT13 tRNA methyltransferase 13 homolog 0.988 4.741 | ||
| 7906757 FCGR2A Fc fragment of IgG receptor IIa 1.322 4.537 | ||
| 7908459 CFH complement factor H 1.954 6.964 | ||
| 7913450 HSPG2 heparan sulfate proteoglycan 2 1.23 5.025 | ||
| 7916432 DHCR24 24-dehydrocholesterol reductase 2.012 5.889 | ||
| 7916986 NEGR1 neuronal growth regulator 1 -1.234 4.724 | ||
| 7917954 FRRS1 ferric chelate reductase 1 0.892 4.268 | ||
| 7918323 SORT1 sortilin 1 1.162 5.347 | ||
| 7918457 KCNA3 potassium voltage-gated channel subfamily A member 3 -2.342 5.826 | ||
| 7918857 TSPAN2 tetraspanin 2 1.614 6.163 | ||
| 7922219 SELL selectin L -1.346 4.358 | ||
| 7922717 RGS16 regulator of G-protein signaling 16 -0.906 3.89 | ||
| 7925954 NET1 neuroepithelial cell transforming 1 0.92 4.709 | ||
| 7926223 CAMK1D calcium/calmodulin dependent protein kinase ID 0.938 4.105 | ||
| 7926506 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 1.034 4.389 | ||
| 7929816 SCD stearoyl-CoA desaturase 1.326 5.136 | ||
| 7932285 FAM188A family with sequence similarity 188 member A 0.738 4.172 | ||
| 7932407 ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 0.972 4.084 | ||
| 7933933 DNAJC12 DnaJ heat shock protein family (Hsp40) member C12 0.812 3.985 | ||
| 7935270 BLNK B-cell linker -1.478 5.919 | ||
| 7948364 MPEG1 macrophage expressed 1 -2.01 3.906 | ||
| 7949532 FOSL1 FOS like 1, AP-1 transcription factor subunit -0.848 4.152 | ||
| 7953835 KLRG1 killer cell lectin like receptor G1 1.432 4.987 | ||
| 7955217 SPATS2 spermatogenesis associated serine rich 2 0.814 3.688 | ||
| 7957260 GLIPR1 GLI pathogenesis related 1 -1.624 4.338 | ||
| 7957551 SOCS2 suppressor of cytokine signaling 2 1.178 4.321 | ||
| 7961365 MANSC1 MANSC domain containing 1 1.236 3.972 | ||
| 7963263 0.926 3.894 | ||
| 7965838 1.61 4.607 | ||
| 7968789 RGCC regulator of cell cycle -1.542 4.065 | ||
| 7971731 ATP7B ATPase copper transporting beta 1.044 5.021 | ||
| 7972674 TEX30 testis expressed 30 0.844 4.283 | ||
| 7972682 KDELC1 KDEL motif containing 1 0.848 3.778 | ||
| 7977270 LOC388022 uncharacterized LOC388022 -0.948 4.175 | ||
| 7977319 PLD4 phospholipase D family member 4 -1.1 3.702 | ||
| 7978739 TRAPPC6B trafficking protein particle complex 6B 0.762 3.779 | ||
| 7982154 HERC2P9///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 9///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.104 4.108 | ||
| 7983638 DTWD1 DTW domain containing 1 0.94 4.047 | ||
| 7983650 SLC27A2 solute carrier family 27 member 2 0.888 4.211 | ||
| 7986569 HERC2P4///HERC2P9///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 4///hect domain and RLD 2 pseudogene 9///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.044 4.108 | ||
| 7986701 HERC2P4///HERC2P9///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 4///hect domain and RLD 2 pseudogene 9///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.046 4.015 | ||
| 7988672 HDC histidine decarboxylase 2.074 3.823 | ||
| 7997712 IRF8 interferon regulatory factor 8 -2.834 3.74 | ||
| 8001067 HERC2P4///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 4///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.128 4.402 | ||
| 8001099 HERC2P4///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 4///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.108 4.114 | ||
| 8004691 TMEM88 transmembrane protein 88 -1.216 5.467 | ||
| 8005829 1.044 4.542 | ||
| 8007921 MYL4 myosin light chain 4 1.088 3.716 | ||
| 8012475 MYH10 myosin, heavy chain 10, non-muscle 0.73 3.682 | ||
| 8012918 TVP23C-CDRT4///CDRT4 TVP23C-CDRT4 readthrough///CMT1A duplicated region transcript 4 0.904 4.06 | ||
| 8017186 HEATR6 HEAT repeat containing 6 0.834 3.824 | ||
| 8018114 SDK2 sidekick cell adhesion molecule 2 -1.216 4.075 | ||
| 8021301 RAB27B RAB27B, member RAS oncogene family 1.646 3.96 | ||
| 8022283 PIEZO2 piezo type mechanosensitive ion channel component 2 1.802 3.682 | ||
| 8022295 PIEZO2 piezo type mechanosensitive ion channel component 2 1.926 4.189 | ||
| 8022310 PIEZO2 piezo type mechanosensitive ion channel component 2 1.846 4.414 | ||
| 8022674 CDH2 cadherin 2 -1.616 5.981 | ||
| 8023220 SMAD7 SMAD family member 7 -1.676 4.503 | ||
| 8027254 ZNF90 zinc finger protein 90 0.598 3.709 | ||
| 8028652 ZFP36 ZFP36 ring finger protein -1.77 5.069 | ||
| 8029465 BCL3 B-cell CLL/lymphoma 3 -1.158 4.016 | ||
| 8038981 ZNF611 zinc finger protein 611 0.758 3.707 | ||
| 8040103 ID2 inhibitor of DNA binding 2, HLH protein -2.038 4.986 | ||
| 8041257 SLC30A6 solute carrier family 30 member 6 0.768 3.961 | ||
| 8041781 EPAS1 endothelial PAS domain protein 1 1.558 5.771 | ||
| 8045539 KYNU kynureninase 2.13 6.526 | ||
| 8047403 CASP10 caspase 10 1.048 3.713 | ||
| 8049435 SH3BP4 SH3 domain binding protein 4 -1.044 4.313 | ||
| 8050213 -1.038 3.981 | ||
| 8051462 1.668 5.119 | ||
| 8051928 PREPL prolyl endopeptidase-like 1.018 3.899 | ||
| 8056491 SCN9A sodium voltage-gated channel alpha subunit 9 1.924 7.422 | ||
| 8057677 SLC40A1 solute carrier family 40 member 1 0.914 4.329 | ||
| 8058670 IKZF2 IKAROS family zinc finger 2 0.99 4.254 | ||
| 8059648 1 3.878 | ||
| 8065569 BCL2L1 BCL2 like 1 0.868 3.816 | ||
| 8072744 NCF4 neutrophil cytosolic factor 4 1.188 4.667 | ||
| 8073960 PIM3 Pim-3 proto-oncogene, serine/threonine kinase -0.626 3.686 | ||
| 8077366 LRRN1 leucine rich repeat neuronal 1 -1.018 4.072 | ||
| 8083876 SKIL SKI-like proto-oncogene -2.238 4.047 | ||
| 8085797 THRB thyroid hormone receptor beta 1.256 4.239 | ||
| 8086341 XIRP1 xin actin binding repeat containing 1 -0.626 3.672 | ||
| 8092691 BCL6 B-cell CLL/lymphoma 6 -1.47 3.667 | ||
| 8094638 WDR19 WD repeat domain 19 0.79 3.812 | ||
| 8095343 STAP1 signal transducing adaptor family member 1 1.41 4.36 | ||
| 8095819 FAM47E-STBD1///FAM47E FAM47E-STBD1 readthrough///family with sequence similarity 47 member E 1.202 4.06 | ||
| 8097813 ARFIP1 ADP ribosylation factor interacting protein 1 0.644 3.81 | ||
| 8098060 RXFP1 relaxin/insulin like family peptide receptor 1 2.132 7.497 | ||
| 8098195 MSMO1 methylsterol monooxygenase 1 2.178 6.641 | ||
| 8099476 PROM1 prominin 1 -1.434 4.044 | ||
| 8100798 SULT1B1 sulfotransferase family 1B member 1 -0.72 3.756 | ||
| 8101126 CXCL10 C-X-C motif chemokine ligand 10 -1.212 3.789 | ||
| 8103226 TMEM154 transmembrane protein 154 1.118 4.788 | ||
| 8103922 CASP3 caspase 3 1.054 4.786 | ||
| 8105989 LOC441081 POM121 membrane glycoprotein (rat) pseudogene -0.994 4.177 | ||
| 8106280 HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 1.016 3.856 | ||
| 8106962 ARSK arylsulfatase family member K 0.79 3.67 | ||
| 8111255 CDH10 cadherin 10 -0.948 3.973 | ||
| 8112476 LOC441081 POM121 membrane glycoprotein (rat) pseudogene -0.95 3.925 | ||
| 8113073 ARRDC3 arrestin domain containing 3 1.386 3.694 | ||
| 8114010 IRF1 interferon regulatory factor 1 -1.31 3.936 | ||
| 8116835 GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) 1.348 4.252 | ||
| 8120826 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 0.8 4.347 | ||
| 8121130 1.318 4.528 | ||
| 8121814 NKAIN2 Na+/K+ transporting ATPase interacting 2 0.75 4.132 | ||
| 8122265 TNFAIP3 TNF alpha induced protein 3 -1.658 3.717 | ||
| 8123744 F13A1 coagulation factor XIII A chain -2.24 3.791 | ||
| 8124040 ATXN1 ataxin 1 0.714 3.905 | ||
| 8124848 IER3 immediate early response 3 -1.838 4.466 | ||
| 8126153 KCNK5 potassium two pore domain channel subfamily K member 5 0.914 4.811 | ||
| 8140782 ABCB1 ATP binding cassette subfamily B member 1 -0.748 3.715 | ||
| 8146794 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 -1.08 4.296 | ||
| 8148448 KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 -0.888 4.315 | ||
| 8149071 ANGPT2 angiopoietin 2 1.55 4.655 | ||
| 8150439 ANK1 ankyrin 1 0.808 4.129 | ||
| 8150962 TOX thymocyte selection associated high mobility group box 0.854 4.815 | ||
| 8151223 SLCO5A1 solute carrier organic anion transporter family member 5A1 -0.732 4.141 | ||
| 8152215 KLF10 Kruppel like factor 10 -1.546 5.2 | ||
| 8154207 0.976 4.519 | ||
| 8154215 1.178 5.342 | ||
| 8154692 TEK TEK receptor tyrosine kinase 1.164 3.914 | ||
| 8155754 MAMDC2 MAM domain containing 2 1.67 7.89 | ||
| 8156706 TMOD1 tropomodulin 1 0.892 3.759 | ||
| 8160756 DCAF12 DDB1 and CUL4 associated factor 12 0.678 3.69 | ||
| 8161270 ANKRD18A ankyrin repeat domain 18A -1.232 3.823 | ||
| 8162455 NINJ1 ninjurin 1 -1.056 5.331 | ||
| 8163000 -0.734 3.916 | ||
| 8168472 ATP7A ATPase copper transporting alpha 0.806 4.271 | ||
| 8174207 NXF3 nuclear RNA export factor 3 1.196 3.974 | ||
| 8174513 CHRDL1 chordin like 1 -0.822 3.755 | ||
| 8175593 IDS iduronate 2-sulfatase -1.482 4.272 | ||
| 8178435 IER3 immediate early response 3 -2.054 4.579 | ||
| 8179704 IER3 immediate early response 3 -1.838 4.466 | ||
| 8180268 CYP51A1 cytochrome P450 family 51 subfamily A member 1 1.036 4.52 |
95 changes: 95 additions & 0 deletions
95
...hronic-myeloid-leukemia/article-imatinib/01-geo/cml_x_nbm-prog_geo-significant-strict.tsv
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,95 @@ | ||
| ID Gene.symbol Gene.title log2(fold change) -log10(Pvalue) | ||
| 7894510 1.34 3.925 | ||
| 7896577 1.024 3.886 | ||
| 7896687 -1.326 4.262 | ||
| 7896690 -1.498 5.943 | ||
| 7896703 -1.162 4.282 | ||
| 7896707 -1.4 5.586 | ||
| 7896715 -1.934 4.109 | ||
| 7898623 UBXN10 UBX domain protein 10 1.132 4.625 | ||
| 7902072 1.22 4.977 | ||
| 7902074 LEPROT///LEPR leptin receptor overlapping transcript///leptin receptor 1.314 4.682 | ||
| 7902102 1.6 3.84 | ||
| 7906757 FCGR2A Fc fragment of IgG receptor IIa 1.322 4.537 | ||
| 7908459 CFH complement factor H 1.954 6.964 | ||
| 7913450 HSPG2 heparan sulfate proteoglycan 2 1.23 5.025 | ||
| 7916432 DHCR24 24-dehydrocholesterol reductase 2.012 5.889 | ||
| 7916986 NEGR1 neuronal growth regulator 1 -1.234 4.724 | ||
| 7918323 SORT1 sortilin 1 1.162 5.347 | ||
| 7918457 KCNA3 potassium voltage-gated channel subfamily A member 3 -2.342 5.826 | ||
| 7918857 TSPAN2 tetraspanin 2 1.614 6.163 | ||
| 7922219 SELL selectin L -1.346 4.358 | ||
| 7926506 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 1.034 4.389 | ||
| 7929816 SCD stearoyl-CoA desaturase 1.326 5.136 | ||
| 7935270 BLNK B-cell linker -1.478 5.919 | ||
| 7948364 MPEG1 macrophage expressed 1 -2.01 3.906 | ||
| 7953835 KLRG1 killer cell lectin like receptor G1 1.432 4.987 | ||
| 7957260 GLIPR1 GLI pathogenesis related 1 -1.624 4.338 | ||
| 7957551 SOCS2 suppressor of cytokine signaling 2 1.178 4.321 | ||
| 7961365 MANSC1 MANSC domain containing 1 1.236 3.972 | ||
| 7965838 1.61 4.607 | ||
| 7968789 RGCC regulator of cell cycle -1.542 4.065 | ||
| 7971731 ATP7B ATPase copper transporting beta 1.044 5.021 | ||
| 7977319 PLD4 phospholipase D family member 4 -1.1 3.702 | ||
| 7982154 HERC2P9///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 9///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.104 4.108 | ||
| 7986569 HERC2P4///HERC2P9///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 4///hect domain and RLD 2 pseudogene 9///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.044 4.108 | ||
| 7986701 HERC2P4///HERC2P9///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 4///hect domain and RLD 2 pseudogene 9///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.046 4.015 | ||
| 7988672 HDC histidine decarboxylase 2.074 3.823 | ||
| 7997712 IRF8 interferon regulatory factor 8 -2.834 3.74 | ||
| 8001067 HERC2P4///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 4///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.128 4.402 | ||
| 8001099 HERC2P4///HERC2P2///HERC2P3///HERC2 hect domain and RLD 2 pseudogene 4///hect domain and RLD 2 pseudogene 2///hect domain and RLD 2 pseudogene 3///HECT and RLD domain containing E3 ubiquitin protein ligase 2 1.108 4.114 | ||
| 8004691 TMEM88 transmembrane protein 88 -1.216 5.467 | ||
| 8005829 1.044 4.542 | ||
| 8007921 MYL4 myosin light chain 4 1.088 3.716 | ||
| 8018114 SDK2 sidekick cell adhesion molecule 2 -1.216 4.075 | ||
| 8021301 RAB27B RAB27B, member RAS oncogene family 1.646 3.96 | ||
| 8022283 PIEZO2 piezo type mechanosensitive ion channel component 2 1.802 3.682 | ||
| 8022295 PIEZO2 piezo type mechanosensitive ion channel component 2 1.926 4.189 | ||
| 8022310 PIEZO2 piezo type mechanosensitive ion channel component 2 1.846 4.414 | ||
| 8022674 CDH2 cadherin 2 -1.616 5.981 | ||
| 8023220 SMAD7 SMAD family member 7 -1.676 4.503 | ||
| 8028652 ZFP36 ZFP36 ring finger protein -1.77 5.069 | ||
| 8029465 BCL3 B-cell CLL/lymphoma 3 -1.158 4.016 | ||
| 8040103 ID2 inhibitor of DNA binding 2, HLH protein -2.038 4.986 | ||
| 8041781 EPAS1 endothelial PAS domain protein 1 1.558 5.771 | ||
| 8045539 KYNU kynureninase 2.13 6.526 | ||
| 8047403 CASP10 caspase 10 1.048 3.713 | ||
| 8049435 SH3BP4 SH3 domain binding protein 4 -1.044 4.313 | ||
| 8050213 -1.038 3.981 | ||
| 8051462 1.668 5.119 | ||
| 8051928 PREPL prolyl endopeptidase-like 1.018 3.899 | ||
| 8056491 SCN9A sodium voltage-gated channel alpha subunit 9 1.924 7.422 | ||
| 8072744 NCF4 neutrophil cytosolic factor 4 1.188 4.667 | ||
| 8077366 LRRN1 leucine rich repeat neuronal 1 -1.018 4.072 | ||
| 8083876 SKIL SKI-like proto-oncogene -2.238 4.047 | ||
| 8085797 THRB thyroid hormone receptor beta 1.256 4.239 | ||
| 8092691 BCL6 B-cell CLL/lymphoma 6 -1.47 3.667 | ||
| 8095343 STAP1 signal transducing adaptor family member 1 1.41 4.36 | ||
| 8095819 FAM47E-STBD1///FAM47E FAM47E-STBD1 readthrough///family with sequence similarity 47 member E 1.202 4.06 | ||
| 8098060 RXFP1 relaxin/insulin like family peptide receptor 1 2.132 7.497 | ||
| 8098195 MSMO1 methylsterol monooxygenase 1 2.178 6.641 | ||
| 8099476 PROM1 prominin 1 -1.434 4.044 | ||
| 8101126 CXCL10 C-X-C motif chemokine ligand 10 -1.212 3.789 | ||
| 8103226 TMEM154 transmembrane protein 154 1.118 4.788 | ||
| 8103922 CASP3 caspase 3 1.054 4.786 | ||
| 8106280 HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 1.016 3.856 | ||
| 8113073 ARRDC3 arrestin domain containing 3 1.386 3.694 | ||
| 8114010 IRF1 interferon regulatory factor 1 -1.31 3.936 | ||
| 8116835 GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) 1.348 4.252 | ||
| 8121130 1.318 4.528 | ||
| 8122265 TNFAIP3 TNF alpha induced protein 3 -1.658 3.717 | ||
| 8123744 F13A1 coagulation factor XIII A chain -2.24 3.791 | ||
| 8124848 IER3 immediate early response 3 -1.838 4.466 | ||
| 8146794 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 -1.08 4.296 | ||
| 8149071 ANGPT2 angiopoietin 2 1.55 4.655 | ||
| 8152215 KLF10 Kruppel like factor 10 -1.546 5.2 | ||
| 8154215 1.178 5.342 | ||
| 8154692 TEK TEK receptor tyrosine kinase 1.164 3.914 | ||
| 8155754 MAMDC2 MAM domain containing 2 1.67 7.89 | ||
| 8161270 ANKRD18A ankyrin repeat domain 18A -1.232 3.823 | ||
| 8162455 NINJ1 ninjurin 1 -1.056 5.331 | ||
| 8174207 NXF3 nuclear RNA export factor 3 1.196 3.974 | ||
| 8175593 IDS iduronate 2-sulfatase -1.482 4.272 | ||
| 8178435 IER3 immediate early response 3 -2.054 4.579 | ||
| 8179704 IER3 immediate early response 3 -1.838 4.466 | ||
| 8180268 CYP51A1 cytochrome P450 family 51 subfamily A member 1 1.036 4.52 |
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...nic-myeloid-leukemia/article-imatinib/01-geo/cml_x_nbm-prog_geo-significant.png
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