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deLaatLab

GitHub page de Laat lab

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  1. pipe4C pipe4C Public

    4C-seq processing pipeline

    R 22 17

  2. MG-NIPD MG-NIPD Public

    Non-invasive prenatal diagnostics for monogenic diseases

    R 5 3

  3. peakHiC peakHiC Public

    peakHiC method to identify 3D chromatin interactions (loops) from HiC data

    R 5 1

  4. mc4c_py mc4c_py Public

    Forked from UMCUGenetics/pymc4c

    A python based approach to processing MC4C data

    Python 2

  5. PLIER PLIER Public

    Detecting chromosomal rearrangements from targeted proximity-ligation data

    Python 2 1

  6. peakHiC_trackHub peakHiC_trackHub Public

    peakHiC V4C bigWig tracks for import into e.g. UCSC genome browser

    1

Repositories

Showing 10 of 12 repositories
  • CSND Public

    Gene expression, epigenetics and disease CSND course.

    deLaatLab/CSND’s past year of commit activity
    0 0 0 0 Updated Jan 24, 2025
  • Tjalsma_2025 Public

    Long-range enhancer-controlled genes are hyper-sensitive to regulatory factor perturbations.

    deLaatLab/Tjalsma_2025’s past year of commit activity
    R 0 0 0 0 Updated Jan 24, 2025
  • HbF_react Public

    ATAC and C&R coverage plots for "Enhancer distance matters: forced linear recruitment of a super-enhancer strongly reactivates the developmentally silenced fetal HBG globin genes"

    deLaatLab/HbF_react’s past year of commit activity
    R 0 0 0 0 Updated Sep 13, 2024
  • pipe4C Public

    4C-seq processing pipeline

    deLaatLab/pipe4C’s past year of commit activity
    R 22 17 2 0 Updated Apr 17, 2024
  • triplix Public

    An interface and processing pipeline for multi-contact spatial genomics data

    deLaatLab/triplix’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 7, 2023
  • PLIER Public

    Detecting chromosomal rearrangements from targeted proximity-ligation data

    deLaatLab/PLIER’s past year of commit activity
    Python 2 1 0 0 Updated Mar 6, 2023
  • PCNA-NAQ-seq Public
    deLaatLab/PCNA-NAQ-seq’s past year of commit activity
    R 0 0 0 0 Updated Jul 12, 2022
  • peakHiC Public

    peakHiC method to identify 3D chromatin interactions (loops) from HiC data

    deLaatLab/peakHiC’s past year of commit activity
    R 5 1 2 0 Updated May 31, 2021
  • mc4c_py Public Forked from UMCUGenetics/pymc4c

    A python based approach to processing MC4C data

    deLaatLab/mc4c_py’s past year of commit activity
    Python 2 2 0 0 Updated Mar 19, 2020
  • peakHiC_trackHub Public

    peakHiC V4C bigWig tracks for import into e.g. UCSC genome browser

    deLaatLab/peakHiC_trackHub’s past year of commit activity
    1 0 0 0 Updated Jan 9, 2020
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