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Add space-charge to Cheetah #142

Merged
merged 127 commits into from
Jun 26, 2024
Merged

Add space-charge to Cheetah #142

merged 127 commits into from
Jun 26, 2024

Commits on Mar 21, 2024

  1. save test

    Grégoire Charleux committed Mar 21, 2024
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Commits on Apr 5, 2024

  1. first commit

    Grégoire Charleux committed Apr 5, 2024
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  2. maj1

    @greglenerd
    greglenerd committed Apr 5, 2024
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  3. commit2

    @greglenerd
    greglenerd committed Apr 5, 2024
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  4. com

    @greglenerd
    greglenerd committed Apr 5, 2024
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  5. c

    @greglenerd
    greglenerd committed Apr 5, 2024
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  6. c

    @greglenerd
    greglenerd committed Apr 5, 2024
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  7. c

    @greglenerd
    greglenerd committed Apr 5, 2024
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  8. c

    @greglenerd
    greglenerd committed Apr 5, 2024
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  9. Update of charge deposition. First draft of poisson solver

    @greglenerd
    greglenerd committed Apr 5, 2024
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Commits on Apr 10, 2024

  1. added space_cherge_deposition_vec for faster computation. First draft… 

    … of all the IGF solver functions.
    @greglenerd
    greglenerd committed Apr 10, 2024
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Commits on Apr 11, 2024

  1. First version of the whole IGF solver. Works with one particle, but s… 

    …ome bugs.
    @greglenerd
    greglenerd committed Apr 11, 2024
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  2. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed Apr 11, 2024
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  3. vectorized version of the code

    @greglenerd
    greglenerd committed Apr 11, 2024
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Commits on Apr 25, 2024

  1. first "complete" version of the code, with the track method implement… 

    …ed. The code is not yet tested. (last test E+vB field)
    @greglenerd
    greglenerd committed Apr 25, 2024
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Commits on Apr 26, 2024

  1. version that runs correctly, need to be quantitatively tested

    @greglenerd
    greglenerd committed Apr 26, 2024
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Commits on Apr 30, 2024

  1. Draft version of the code, tested with the test_space_charge_kick.py … 

    …test (expansion of a cold uniform beam).
    @greglenerd
    greglenerd committed Apr 30, 2024
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Commits on May 3, 2024

  1. minor written chqnges to accelerator.py

    @greglenerd
    greglenerd committed May 3, 2024
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Commits on May 6, 2024

  1. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  2. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  3. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  4. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  5. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  6. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  7. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  8. before pulling the suggested changes

    @greglenerd
    greglenerd committed May 6, 2024
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  9. Merge branch 'space_charge' of https://github.com/greglenerd/cheetah … 

    …into space_charge
    @greglenerd
    greglenerd committed May 6, 2024
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  10. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  11. .

    @greglenerd
    greglenerd committed May 6, 2024
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  12. Merge branch 'space_charge' of https://github.com/greglenerd/cheetah … 

    …into space_charge
    @greglenerd
    greglenerd committed May 6, 2024
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  13. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  14. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  15. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  16. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  17. Update tests/test_space_charge_kick.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  18. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  19. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
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  20. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  21. Update cheetah/accelerator.py 

    Co-authored-by: Remi Lehe <remi.lehe@normalesup.org>
    @greglenerd @RemiLehe
    greglenerd and RemiLehe committed May 6, 2024
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  22. cleaning

    @greglenerd
    greglenerd committed May 6, 2024
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  23. Merge branch 'space_charge' of https://github.com/greglenerd/cheetah … 

    …into space_charge
    @greglenerd
    greglenerd committed May 6, 2024
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Commits on May 7, 2024

  1. new test, little change in accelerator.py

    @greglenerd
    greglenerd committed May 7, 2024
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  2. Merge branch 'desy_master' into space_charge_merged

    @greglenerd
    greglenerd committed May 7, 2024
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  3. start adapting to PR 116

    @greglenerd
    greglenerd committed May 7, 2024
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Commits on May 8, 2024

  1. Fix bugs associated with array shapes

    @RemiLehe
    RemiLehe committed May 8, 2024
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Commits on May 9, 2024

  1. Fix initialization of the Green function

    @RemiLehe
    RemiLehe committed May 9, 2024
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  2. Fix errors with shapes

    @RemiLehe
    RemiLehe committed May 9, 2024
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  3. Fix remaining bugs

    @RemiLehe
    RemiLehe committed May 9, 2024
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  4. Fix test

    @RemiLehe
    RemiLehe committed May 9, 2024
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Commits on May 10, 2024

  1. Merge pull request #1 from RemiLehe/space_charge_merged 

    [WIP] Code changes to account for desy-ml#116
    @greglenerd
    greglenerd committed May 10, 2024
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Commits on May 14, 2024

  1. Merge branch 'master' into space_charge

    @jank324
    jank324 committed May 14, 2024
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Commits on May 23, 2024

  1. Reformat code with black

    @RemiLehe
    RemiLehe committed May 23, 2024
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Commits on May 28, 2024

  1. Merge remote-tracking branch 'public/master' into space_charge

    @RemiLehe
    RemiLehe committed May 28, 2024
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Commits on May 29, 2024

  1. Merge branch 'master' into space_charge

    @jank324
    jank324 committed May 29, 2024
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Commits on May 31, 2024

  1. Fix CI

    @RemiLehe
    RemiLehe committed May 31, 2024
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  2. Fix CI

    @RemiLehe
    RemiLehe committed May 31, 2024
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  3. Apply isort corrections

    @RemiLehe
    RemiLehe committed May 31, 2024
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  4. Apply flake8 corrections

    @RemiLehe
    RemiLehe committed May 31, 2024
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Commits on Jun 4, 2024

  1. Apply suggestions from code review 

    Co-authored-by: Jan Kaiser <jan.kaiser.email@googlemail.com>
    @cr-xu @jank324
    cr-xu and jank324 committed Jun 4, 2024
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  2. black formatting

    @cr-xu
    cr-xu committed Jun 4, 2024
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  3. Apply suggestions from code review

    @cr-xu
    cr-xu committed Jun 4, 2024
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Commits on Jun 6, 2024

  1. Merge branch 'master' into space_charge

    @jank324
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Commits on Jun 9, 2024

  1. Set the random seed in space charge test

    @RemiLehe
    RemiLehe committed Jun 9, 2024
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  2. Apply suggestions from code review

    @RemiLehe
    RemiLehe committed Jun 9, 2024
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  3. Update test file

    @RemiLehe
    RemiLehe committed Jun 9, 2024
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  4. Add docstrings

    @RemiLehe
    RemiLehe committed Jun 9, 2024
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  5. Change a few names

    @RemiLehe
    RemiLehe committed Jun 9, 2024
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  6. Reformat files

    @RemiLehe
    RemiLehe committed Jun 9, 2024
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Commits on Jun 11, 2024

  1. Apply suggestions from code review

    @RemiLehe
    RemiLehe committed Jun 11, 2024
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  2. Update name: n_batch -> batch_size

    @RemiLehe
    RemiLehe committed Jun 11, 2024
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  3. Update formatting

    @RemiLehe
    RemiLehe committed Jun 11, 2024
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Commits on Jun 13, 2024

  1. Merge branch 'master' into space_charge

    @jank324
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Commits on Jun 15, 2024

  1. Move random seed to individual test functions

    @jank324
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  2. Add test for space charge gradient computation

    @jank324
    jank324 committed Jun 15, 2024
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  3. Minor formating changes

    @jank324
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  4. Replace obvious in-place operations with out-of-place alternatives

    @jank324
    jank324 committed Jun 15, 2024
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  5. Fix in-place gradient error

    @jank324
    jank324 committed Jun 15, 2024
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  6. Revert "Replace obvious in-place operations with out-of-place alterna… 

    …tives"

This reverts commit fd0be7a.
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  7. Add test to check if space charge works vectorised accroding to desy-… 

    …ml#116
    @jank324
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Commits on Jun 16, 2024

  1. Implement mostly functional vectorisation for space charge

    @jank324
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Commits on Jun 18, 2024

  1. First index_put_ location where vectorisation didn't work

    @jank324
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  2. Add test to check that vectorisation doesn't just not crash but also … 

    …has correct result
    @jank324
    jank324 committed Jun 18, 2024
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  3. Fix test name for better test selection

    @jank324
    jank324 committed Jun 18, 2024
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  4. Fix shape issue in vectorised beam expansion test and add segment len… 

    …gth test
    @jank324
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  5. Fix gradient issue

    @jank324
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  6. Refactor gammaref

    @jank324
    jank324 committed Jun 18, 2024
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  7. Refactor betaref

    @jank324
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  8. Refactor moments computations

    @jank324
    jank324 committed Jun 18, 2024
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  9. Remove unused constants

    @jank324
    jank324 committed Jun 18, 2024
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  10. Fix length computation

    @jank324
    jank324 committed Jun 18, 2024
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  11. Remove out-of-date todo

    @jank324
    jank324 committed Jun 18, 2024
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  12. Add SpaceChargeKick to documentation

    @jank324
    jank324 committed Jun 18, 2024
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  13. Merge branch 'master' into space_charge

    @jank324
    jank324 committed Jun 18, 2024
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Commits on Jun 19, 2024

  1. Fix issues in _compute_forces_

    @cr-xu
    cr-xu committed Jun 19, 2024
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  2. Fix index out of range issue

    @cr-xu
    cr-xu committed Jun 19, 2024
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  3. Merge branch 'master' into space_charge

    @jank324
    jank324 committed Jun 19, 2024
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  4. Add entry to changelog

    @jank324
    jank324 committed Jun 19, 2024
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  5. Merge branch 'space_charge' of github.com:greglenerd/cheetah into spa… 

    …ce_charge
    @jank324
    jank324 committed Jun 19, 2024
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  6. Remove not-needed atol as per comment by @ax3l

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  7. Remove try_batched notebook

    @jank324
    jank324 committed Jun 19, 2024
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  8. Implement plotting for SpaceChargeKick

    @jank324
    jank324 committed Jun 19, 2024
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  9. Use int instead of long

    @RemiLehe
    RemiLehe committed Jun 19, 2024
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Commits on Jun 20, 2024

  1. Updates to and from moments conversion method names

    @jank324
    jank324 committed Jun 20, 2024
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  2. Merge branch 'space_charge' of github.com:greglenerd/cheetah into spa… 

    …ce_charge
    @jank324
    jank324 committed Jun 20, 2024
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  3. Merge branch 'master' into space_charge

    @jank324
    jank324 committed Jun 20, 2024
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  4. Change SpaceChargeKick plotting to a single line

    @jank324
    jank324 committed Jun 20, 2024
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  5. Implement SpaceChargeKick.defining_features

    @jank324
    jank324 committed Jun 20, 2024
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  6. Implement SpaceChargeKick.__repr__

    @jank324
    jank324 committed Jun 20, 2024
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  7. Move grid extent sigma comment up by one line

    @jank324
    jank324 committed Jun 20, 2024
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Commits on Jun 21, 2024

  1. Improve docstring and comments

    @cr-xu
    cr-xu committed Jun 21, 2024
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  2. Update cheetah/particles/particle_beam.py

    @cr-xu
    cr-xu committed Jun 21, 2024
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  3. Slight change to comment formatting

    @jank324
    jank324 committed Jun 21, 2024
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  4. Fix flake8 warning

    @jank324
    jank324 committed Jun 21, 2024
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  5. Improve docstring for from_xyz_pxpypz as well

    @jank324
    jank324 committed Jun 21, 2024
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  6. Tiny formating improvement

    @jank324
    jank324 committed Jun 21, 2024
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  7. Fix main docstring

    @jank324
    jank324 committed Jun 21, 2024
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  8. Another fix to the docstring

    @jank324
    jank324 committed Jun 21, 2024
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  9. Attempt to fix docstring bullet point rendering

    @jank324
    jank324 committed Jun 21, 2024
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Commits on Jun 22, 2024

  1. Another bullet point docstring fix

    @jank324
    jank324 committed Jun 22, 2024
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Commits on Jun 25, 2024

  1. Some refactoring

    @RemiLehe
    RemiLehe committed Jun 25, 2024
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  2. Simplify division by cell volume

    @RemiLehe
    RemiLehe committed Jun 25, 2024
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  3. Update a few docstrings

    @RemiLehe
    RemiLehe committed Jun 25, 2024
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  4. Reduce length of lines

    @RemiLehe
    RemiLehe committed Jun 25, 2024
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  5. Update name from moments to xp_coordinates

    @RemiLehe
    RemiLehe committed Jun 25, 2024
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  6. Use rfft and irfft

    @RemiLehe
    RemiLehe committed Jun 25, 2024
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  7. Change from moments to xp_coords

    @RemiLehe
    RemiLehe committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. Merge branch 'master' into space_charge

    @jank324
    jank324 committed Jun 26, 2024
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