python-slide-crop

Crops and exports slide images

Supports the following slide formats

(Uses the OpenSlide library)

• Aperio (.svs, .tif)
• Hamamatsu (.ndpi, .vms, .vmu)
• Leica (.scn)
• MIRAX (.mrxs)
• Philips (.tiff)
• Sakura (.svslide)
• Trestle (.tif)
• Ventana (.bif, .tif)
• Generic tiled TIFF (.tif)

Getting started

This script was created in python 3 with the following dependencies:

Dependencies

1. OpenSlide (https://openslide.org)
2. OpenCV2 (https://opencv.org)
3. Numpy

Usage

1. python crop.py [filename] [extension]
2. drag to select area for export
3. press ENTER(RETURN) to export image
4. press ESC to close application