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Releases: donovan-h-parks/RefineM

0.1.2

12 Nov 20:11
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  • added scipy and dendropy to setup.py
  • updates to work with BioLib >= v0.1.6

0.1.1

11 Mar 16:47
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  • port to Python 3
  • updated shebang to require python3

0.0.25

30 Jul 21:16
bcf7888
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  • Updated setup.py to include pysam

0.0.24

04 Oct 16:19
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  • improved handling and error reporting for Pearson's correlation

0.0.23

02 Feb 16:34
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  • implemented workaround for FloatingPointError when using numpy.mean on small number (e.g., 1e-310)

0.0.22

18 Jan 16:11
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  • added HMMs for identifying 16S rRNA genes
  • better support for bins containing a single contig

0.0.21

14 Dec 17:19
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  • Previous versions use both a mean absolute error and correlation criteria to identify contigs with divergent coverage profiles. Starting with this version, only the mean absolute error criteria is used by default. The correlation criteria can be misleading with fewer than 6 data points (i.e., BAM files) so is not used by default.

0.0.20

05 Oct 15:38
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  • minor updates for compatibility with biolib v0.0.45

0.0.17

25 Apr 10:00
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  • improved identification of taxonomic outliers

0.0.15

26 Jul 03:39
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  • fixed small dependency bug in setup.py
  • cleaned up README.rst
  • thanks to Tim Savannah for these fixes