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v0.3.0

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@dubssieg dubssieg released this 17 Apr 09:03
· 49 commits to master since this release
8c83296

New functionnalities

  • correct (WIP, experimental) corrects the graph by adding missing information back into it.
  • multigrapher creates interactive graph representation of the differnces between two pangenome graphs
  • compress (WIP, experimental) compresses the graph by collapsing substitution bubbles, losselessly
  • unfold (WIP, experimental) break cycles in the graph by adding nodes and edges in it

What's Changed

  • ✨ Adding cycle breaking unfold command by @Tharos-ux in #18
  • 🐛 Fix issue #19, #20 with changes in main and grapher by @Tharos-ux in #21
  • 🧵 Adding multithreading on edit by @Tharos-ux in #22
  • ⬆️ Fix dependencies and deprecate isolate_by_range.py by @Tharos-ux in #23
  • ➖ Fix main.py imports by @Tharos-ux in #24
  • 🔊 Add basic logs for edit_distance by @Tharos-ux in #25
  • 🐛 Fix typeerror on arg for edition by @Tharos-ux in #26
  • ⚡️ Adding low-memory profile for graph loading by @Tharos-ux in #27
  • 🔊 Adding logs for edit_distance by @Tharos-ux in #28
  • Pattern exclusion, memory tracing and toy examples update by @Tharos-ux in #29
  • 📈 Add memory tracking in edit_distance by @Tharos-ux in #30
  • Main by @Tharos-ux in #31
  • Main by @Tharos-ux in #32
  • Main by @Tharos-ux in #33
  • 🚑️ Add security on orientation_view accesses by @Tharos-ux in #34
  • Adding multigrapher to the palette of tools by @Tharos-ux in #35
  • Add timing for HPRC experiment by @Tharos-ux in #36
  • ⚡️ Improving performance of pancat edit, pancat grapher and `panc… by @Tharos-ux in #37
  • Main by @Tharos-ux in #38
  • Build 0.3.0 by @Tharos-ux in #39

Full Changelog: v0.2.0...v0.3.0