First out-of-beta release of SBML2RDF: A tool that converts a metabolic network in SBML format into RDF (turtle synthax).
new features
optional model enhancement for knowledge graph, adding new statements not explicitly defined in SBML, using SIO and SBO ontologies:
- links between same compounds in different compartments
- direct links between reactants and products of the same reaction (compound graph)
- side compounds (also known as, or closely related to : ubiquitous/auxiliary/currency/ancillary compounds) typing from a provided list.