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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 239 repositories
  • athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    eastgenomics/athena’s past year of commit activity
    HTML 4 MIT 2 13 0 Updated Jan 16, 2025
  • trendyQC Public

    Django app for monitoring trends in MultiQC data

    eastgenomics/trendyQC’s past year of commit activity
    Python 1 MIT 0 33 (1 issue needs help) 0 Updated Jan 16, 2025
  • eggd_fusioninspector Public
    eastgenomics/eggd_fusioninspector’s past year of commit activity
    Shell 2 MIT 0 0 1 Updated Jan 16, 2025
  • eggd_GATKgCNV_call Public
    eastgenomics/eggd_GATKgCNV_call’s past year of commit activity
    Python 2 MIT 1 0 1 Updated Jan 16, 2025
  • NGS_Tar_deletion Public

    automated deletion of NGS .tar files on DNAnexus

    eastgenomics/NGS_Tar_deletion’s past year of commit activity
    0 0 0 1 Updated Jan 14, 2025
  • uranus_nf_core_mini Public

    A mini uranus mostly nf-core pipeline that incorporates mosdepth, cggpindel (not nf-core) and sentieon bwamem

    eastgenomics/uranus_nf_core_mini’s past year of commit activity
    Nextflow 0 0 0 0 Updated Jan 14, 2025
  • eggd_generate_rd_wgs_workbook Public
    eastgenomics/eggd_generate_rd_wgs_workbook’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 14, 2025
  • eggd_conductor Public

    DNAnexus app for automated analysis

    eastgenomics/eggd_conductor’s past year of commit activity
    Python 1 MIT 1 23 0 Updated Jan 14, 2025
  • Haemonc_requests Public
    eastgenomics/Haemonc_requests’s past year of commit activity
    Python 1 0 1 1 Updated Jan 13, 2025
  • Uranus_nextflow_mini Public

    A mini Uranus pipeline including bwamem, cgppindel and sompy.

    eastgenomics/Uranus_nextflow_mini’s past year of commit activity
    Nextflow 0 0 0 0 Updated Jan 13, 2025
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