The repo contains raw data, processed data and codes to replicate the analyses and results associated with the study
- Contains raw data and R session file to generate all results related to mutation analyses in the manuscript
- Session file is named mutation.RData
- Code is available in the parent folder as mutation.analyses.Rmd . To run on your local computer, download the repo and change directory to where you keep the files in the .Rmd file
- Contains raw data and R session file to generate all results related to transcriptomic profiling in the manuscript
- Session file is named AD.data.RData, PD.data.RData, Glioma.data.RData . These contain the raw gene counts, differentially expressed transcripts, and gene set enrihcment analyses for all dataset
- Codes are available in the parent folder as Glioma.data.prep.Rmd, AD.data.prep.Rmd, and PD.data.prep.Rmd . The transcriptomic.analyses.Rmd has all codes to replicate all analyses related to transcriptomics in the manuscript . To run on your local computer, download the repo and change directory to where you keep the files in the .Rmd file