Add netcdf step #742

Workflow file for this run

.github/workflows/test-and-release.yml at 1872228

	# (C) Copyright 2021 ECMWF.
	#
	# This software is licensed under the terms of the Apache Licence Version 2.0
	# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
	# In applying this licence, ECMWF does not waive the privileges and immunities
	# granted to it by virtue of its status as an intergovernmental organisation
	# nor does it submit to any jurisdiction.
	#

	name: Tests and release

	on:
	workflow_dispatch: {}

	# schedule:
	# # Every day at 3:07am
	# # on the "default" branch set in github (currently is develop)
	# - cron: '07 3 * * *'

	release:
	types: [created]

	push:
	branches:
	- "*"

	repository_dispatch:
	types:
	- cdsapi-updated
	- magics-python-updated
	- ecmwf-api-client-updated

	jobs:
	quality:
	name: Code QA
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- run: pip install black flake8 isort
	- run: black --version
	- run: isort --version
	- run: flake8 --version
	- run: isort --check .
	- run: black --check .
	- run: flake8 .

	# test_build_doc:
	# name: Test building documentation
	# runs-on: ubuntu-latest
	# steps:
	# - uses: actions/checkout@v3

	# - name: Install packages needed to build the documentation
	# run: \|
	# pip install sphinx
	# pip install -r docs/requirements.txt
	# sudo apt-get install pandoc
	# pip freeze

	# - name: Documentation
	# run: \|
	# make clean
	# make html
	# # make linkcheck (don't run yet)
	# working-directory: docs

	download-test-data:
	name: Download test data
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Tokens
	shell: python
	env:
	ECMWFAPIRC: ${{ secrets.ECMWFAPIRC }}
	CDSAPIRC: ${{ secrets.CDSAPIRC }}

	run: \|
	import os
	# for n in ('ECMWFAPIRC', 'CDSAPIRC'):
	n = 'ECMWFAPIRC'
	m = os.path.expanduser("~/." + n.lower())
	if os.environ[n]:
	with open(m, "w") as f:
	print(os.environ[n], file=f)
	- run: mkdir test-data
	- run: echo "dataA" > test-data/dataA.txt
	- run: echo "dataB" > test-data/dataB.txt
	- run: cat test-data/dataA.txt
	- name: Tar files
	run: tar -cvf test-data.tar test-data
	- name: Upload Artifact
	uses: actions/upload-artifact@v3
	with:
	name: test-data
	path: test-data.tar

	tests-with-external-download:
	if: github.event_name == 'release' && github.event.action == 'created'
	strategy:
	fail-fast: true
	matrix:
	platform: ["ubuntu-latest", "macos-latest", "windows-latest"]
	python-version: ["3.10"]
	name: Long tests with external downloads Python ${{ matrix.python-version }} ${{ matrix.platform }}
	runs-on: ${{ matrix.platform }}
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Tokens
	shell: python
	env:
	ECMWFAPIRC: ${{ secrets.ECMWFAPIRC }}
	CDSAPIRC: ${{ secrets.CDSAPIRC }}
	run: \|
	import os
	# for n in ('ECMWFAPIRC', 'CDSAPIRC'):
	n = 'ECMWFAPIRC'
	m = os.path.expanduser("~/." + n.lower())
	if os.environ[n]:
	with open(m, "w") as f:
	print(os.environ[n], file=f)
	- name: Install climetlab
	run: pip install -e . # run: pip install .[interactive,tensorflow,zarr]
	- run: climetlab versions
	- name: Install test tools
	run: \|
	pip install pytest
	pip freeze
	- name: Long Tests
	run: pytest --durations=0 -E release -k 'not test_notebooks'

	tests-notebooks:
	if: github.event_name == 'release' && github.event.action == 'created'
	strategy:
	matrix:
	platform: ["ubuntu-latest"]
	python-version: ["3.9"]
	name: Tests notebooks Python ${{ matrix.python-version }} ${{ matrix.platform }}
	runs-on: ${{ matrix.platform }}
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Tokens
	shell: python
	env:
	ECMWFAPIRC: ${{ secrets.ECMWFAPIRC }}
	CDSAPIRC: ${{ secrets.CDSAPIRC }}
	run: \|
	import os
	# for n in ('ECMWFAPIRC', 'CDSAPIRC'):
	n = 'ECMWFAPIRC'
	m = os.path.expanduser("~/." + n.lower())
	if os.environ[n]:
	with open(m, "w") as f:
	print(os.environ[n], file=f)
	- name: Install climetlab
	run: pip install -e . # run: pip install .[interactive,tensorflow,zarr]
	- run: climetlab versions
	- name: Install test tools
	run: \|
	pip install pytest
	pip freeze
	- name: Tests notebooks
	run: pytest tests/documentation/test_notebooks.py

	short-tests:
	# if: (github.event_name == 'release' && github.event.action == 'created') \|\| github.ref == 'refs/heads/main'
	# if: github.event_name == 'release' && github.event.action == 'created'
	# if: github.ref == 'refs/heads/main'
	needs: [download-test-data]
	strategy:
	matrix:
	platform: ["ubuntu-latest", "macos-latest", "windows-latest"]
	python-version: ["3.8", "3.9", "3.10"]
	# platform: ["ubuntu-latest"]
	# python-version: ["3.10"]
	name: Short tests Python ${{ matrix.python-version }} ${{ matrix.platform }}
	runs-on: ${{ matrix.platform }}
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Download test-data
	uses: actions/download-artifact@v3
	with:
	name: test-data
	- run: tar xvf test-data.tar
	- run: cat test-data/dataA.txt
	- name: Tokens
	# (this should be removed when tests are refactored)
	shell: python
	env:
	ECMWFAPIRC: ${{ secrets.ECMWFAPIRC }}
	CDSAPIRC: ${{ secrets.CDSAPIRC }}
	run: \|
	import os
	# for n in ('ECMWFAPIRC', 'CDSAPIRC'):
	n = 'ECMWFAPIRC'
	m = os.path.expanduser("~/." + n.lower())
	if os.environ[n]:
	with open(m, "w") as f:
	print(os.environ[n], file=f)
	- name: Install climetlab
	run: pip install -e .
	- run: climetlab versions
	- name: Install test tools
	run: \|
	pip install pytest
	pip freeze
	- name: Check imports
	run: \|
	pytest tests/test_imports.py
	env:
	SKIP_TEST_IMPORTS: 0
	- name: Tests
	run: \|
	# -E flag is defined in conftest.py
	# notebooks need more dependencies
	# pytest --durations=0 -E release -k 'not test_notebooks'
	pytest --durations=10 -vv -E short
	# - name: Install climetlab full
	# run: \|
	# pip install .[interactive,tensorflow,zarr]
	# pip freeze
	# - name: Tests with dependencies
	# run: \|
	# pytest --durations=10 -vv -E short

	check-version-tag:
	if: github.event_name == 'release' && github.event.action == 'created'
	name: Check versions and tags
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.8"
	- name: Check that tag version matches package version
	run: \|
	tag=${GITHUB_REF#refs/tags/}
	version=$(python setup.py --version)
	echo 'tag='$tag
	echo "version file="$version
	test "$tag" == "$version"

	deploy:
	name: Upload to Pypi and release
	needs: [check-version-tag, short-tests, quality, tests-with-external-download, tests-notebooks]
	# needs: [check-version-tag, short-tests, quality, test_build_doc, tests-with-external-download, tests-notebooks]
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.9"
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install setuptools wheel twine
	- name: Build pip package
	run: python setup.py sdist
	- name: Publish
	env:
	TWINE_USERNAME: __token__
	TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
	run: twine upload --verbose dist/*

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Add netcdf step #742

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