Add pipeline output to data/ and add script to call tar_make() and us…

…e_data()
egouldo · Oct 27, 2023 · 5424771 · 5424771
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commit 5424771
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diff --git a/_targets/meta/meta b/_targets/meta/meta
diff --git a/data-raw/tar_make.R b/data-raw/tar_make.R
@@ -0,0 +1,29 @@
+# ---- Load Libraries ----
+library(tidyverse)
+library(targets)
+library(usethis)
+
+# ---- Run targets pipeline ----
+# tar_destroy() # Uncomment and run if want to reproduce from scratch, run locally only
+tar_make()
+
+# ---- Read targets and use data ----
+
+# Targets required for main manuscript:
+tar_load(ManyEcoEvo)
+tar_load(ManyEcoEvo_yi)
+tar_load(ManyEcoEvo_results)
+tar_load(ManyEcoEvo_yi_results)
+tar_load(ManyEcoEvo_viz)
+tar_load(ManyEcoEvo_yi_viz)
+
+usethis::use_data(ManyEcoEvo, 
+                  ManyEcoEvo_yi,
+                  ManyEcoEvo_results,
+                  ManyEcoEvo_yi_results,
+                  ManyEcoEvo_viz,
+                  ManyEcoEvo_yi_viz,
+                  overwrite = TRUE)
+
+# TODO also need to add raw files to demonstrate pipeline / package functionality in package vignette and software manuscript.
+
diff --git a/data/ManyEcoEvo.rda b/data/ManyEcoEvo.rda
diff --git a/data/ManyEcoEvo_results.rda b/data/ManyEcoEvo_results.rda
diff --git a/data/ManyEcoEvo_viz.rda b/data/ManyEcoEvo_viz.rda
diff --git a/data/ManyEcoEvo_yi.rda b/data/ManyEcoEvo_yi.rda
diff --git a/data/ManyEcoEvo_yi_results.rda b/data/ManyEcoEvo_yi_results.rda
diff --git a/data/ManyEcoEvo_yi_viz.rda b/data/ManyEcoEvo_yi_viz.rda