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#43 replace old "CHECK" vals with ONLY NA
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any strings that had additional text in them after CHECK retained the additional text rather than having the whole string be replaced.
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egouldo committed Aug 5, 2024
1 parent a471343 commit b00d31f
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion data-raw/anonymised_data/master_data.csv
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Expand Up @@ -121,7 +121,7 @@ R_1o4ElmLsRiBa4FJ,Bargo-1-1-1,1,1,1,-0.026830707,slope,383.391807,0.009092046,id
R_1o4ElmLsRiBa4FJ,Bargo-3-3-1,3,3,1,-0.0295659,slope,299.30603,0.010420679,identity,identity,blue tit,1,NA,NA,"original variable (not transformed prior to analysis - if transformed with link function in analysis, click this option)",NA,day_14_tarsus_length,R_1o4ElmLsRiBa4FJ,rear_Cs_at_start_of_rearing,3189,0,linear,standard,14,16,6,8,8,8,0,2,retain,retain,NA,"Overall, our results showed that the more competition, the less nestlings grow. These results were particularly evident when focusing on nestlings’ body mass rather than tarsus length, which is likely due to the larger lability (and lower heritability) of body mass compared to tarsus length.",neg_c,R programming language v.3.5.1 (R Core Team 2018),R,3.5.1,R,3.5.1,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,hatch_year,hatch_nest_breed_ID,NA,NA,hatch_mom_Ring,NA,NA,NA,genetic_dad_ring_(WP_or_EP),NA,NA,NA,NA,NA,rear_nest_breed_ID,rear_area,NA,rear_mom_Ring,rear_dad_Ring,rear_nest_trt,home_or_away,NA,NA,rear_nest_OH,NA,NA,NA,NA,rear_Cs_at_start_of_rearing,NA,NA,NA,NA,NA,day14_measurer,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,brood_mortality,NA,Bargo
R_1o4ElmLsRiBa4FJ,Bargo-2-2-1,2,2,1,-0.09949535,slope,394.77937,0.018919666,identity,identity,blue tit,1,NA,NA,"original variable (not transformed prior to analysis - if transformed with link function in analysis, click this option)",NA,day_14_weight,R_1o4ElmLsRiBa4FJ,rear_Cs_at_start_of_rearing,3189,0,linear,standard,10,12,6,8,4,4,0,2,retain,retain,NA,"Overall, our results showed that the more competition, the less nestlings grow. These results were particularly evident when focusing on nestlings’ body mass rather than tarsus length, which is likely due to the larger lability (and lower heritability) of body mass compared to tarsus length.",neg_c,R programming language v.3.5.1 (R Core Team 2018),R,3.5.1,R,3.5.1,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,hatch_year,hatch_nest_breed_ID,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,rear_nest_breed_ID,rear_area,NA,rear_mom_Ring,NA,rear_nest_trt,home_or_away,NA,NA,rear_nest_OH,NA,NA,NA,NA,rear_Cs_at_start_of_rearing,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,brood_mortality,NA,Bargo
R_1o4ElmLsRiBa4FJ,Bargo-4-4-1,4,4,1,-0.112223317,slope,320.77503,0.020133793,identity,identity,blue tit,1,NA,NA,"original variable (not transformed prior to analysis - if transformed with link function in analysis, click this option)",NA,day_14_weight,R_1o4ElmLsRiBa4FJ,rear_Cs_at_start_of_rearing,3189,0,linear,standard,13,15,6,8,7,7,0,2,retain,retain,NA,"Overall, our results showed that the more competition, the less nestlings grow. These results were particularly evident when focusing on nestlings’ body mass rather than tarsus length, which is likely due to the larger lability (and lower heritability) of body mass compared to tarsus length.",neg_c,R programming language v.3.5.1 (R Core Team 2018),R,3.5.1,R,3.5.1,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,hatch_year,hatch_nest_breed_ID,NA,NA,hatch_mom_Ring,NA,NA,NA,genetic_dad_ring_(WP_or_EP),NA,NA,NA,NA,NA,rear_nest_breed_ID,rear_area,NA,rear_mom_Ring,rear_dad_Ring,rear_nest_trt,home_or_away,NA,NA,rear_nest_OH,NA,NA,NA,NA,rear_Cs_at_start_of_rearing,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,brood_mortality,NA,Bargo
R_1QlnXdW5tKuUQIr,Capella-1-1-1,1,1,1,NA,NA,343.24787,0.2328,log,log,eucalyptus,NA,NA.mixed.team,NA.mixed.team,constructed variable (combining information from two or more original variables),"We added ""euc_sdlgs0_50cm"" and ""euc_sdlgs50cm-2m"" together",euc_sdlgs>2m,R_1QlnXdW5tKuUQIr,NA,NA,NA,NA,NA,22,NA,20,NA,2,NA,NA,NA,NA.mixed.team,NA,NA,"Both net_rearing_manipulation and rear_Cs_at_start_of_rearing were associated with the outcome variables, though net_rearing_manipulation was not significantly associated with tarsus length in my final model. Net_rearing_manipulation was still associated with weight, so an increase in the number of chicks in the nest was linked to lower weights. Similarly, more rear_Cs_at_start_of_rearing was linked shorter tarsus lengths and lower weights. More siblings, and presumably additional competition, was on balance worse for nestling growth.
R_1QlnXdW5tKuUQIr,Capella-1-1-1,1,1,1,NA,NA,343.24787,0.2328,log,log,eucalyptus,NA,NA,NA,constructed variable (combining information from two or more original variables),"We added ""euc_sdlgs0_50cm"" and ""euc_sdlgs50cm-2m"" together",euc_sdlgs>2m,R_1QlnXdW5tKuUQIr,NA,NA,NA,NA,NA,22,NA,20,NA,2,NA,NA,NA,NA,NA,NA,"Both net_rearing_manipulation and rear_Cs_at_start_of_rearing were associated with the outcome variables, though net_rearing_manipulation was not significantly associated with tarsus length in my final model. Net_rearing_manipulation was still associated with weight, so an increase in the number of chicks in the nest was linked to lower weights. Similarly, more rear_Cs_at_start_of_rearing was linked shorter tarsus lengths and lower weights. More siblings, and presumably additional competition, was on balance worse for nestling growth.

I was especially interested in the interactions I might find between net_rearing_manipulation or rear_Cs_at_start_of_rearing and other variables, but for the most part, I could not confirm any such relationships. The exception was the interaction between net_rearing_manipulation and the square of hatch_nest_LD. This suggests that chicks in nests manipulated to have more chicks had greater growth when the lay date of the nest that chick was born in was later in the month.",neg_q,R 3.6.1,R,3.6.1,R,3.6.1,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,hatch_year,NA,hatch_Area,NA,NA,NA,Extra-pair_paternity,NA,NA,hatch_nest_LD,hatch_nest_CS,hatch_nest_OH,d0_hatch_nest_brood_size,d14_hatch_nest_brood_size,NA,rear_area,NA,NA,NA,NA,home_or_away,rear_nest_LD,rear_nest_CS,rear_nest_OH,rear_d0_rear_nest_brood_size,NA,NA,net_rearing_manipulation,rear_Cs_at_start_of_rearing,d14_rear_nest_brood_size,NA,Date_of_day14,day_14_tarsus_length,day_14_weight,day14_measurer,chick_sex_molec,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Capella
R_1QoRu2birFKL9Hx,Berry-1-1-1,1,1,1,-0.05996286,slope,150.69387,0.005510245,identity,identity,blue tit,1,NA,NA,"original variable (not transformed prior to analysis - if transformed with link function in analysis, click this option)",NA,day_14_tarsus_length,R_1QoRu2birFKL9Hx,rear_Cs_at_start_of_rearing,1854,0,linear,standard,8,8,2,2,6,6,0,0,retain,retain,NA,Sibling competition significantly affects the growth of nestling blue tits.,neg_c,R 3.6.3,R,3.6.3,R,3.6.3,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,hatch_year,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,rear_nest_breed_ID,rear_area,rear_Box,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,rear_Cs_at_start_of_rearing,NA,NA,NA,NA,NA,day14_measurer,chick_sex_molec,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,parentage,NA,NA,NA,NA,Berry
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