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Fix/obs unit db ids#72

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nlakmouri wants to merge 38 commits intomasterelixir-europe/plant-brapi-etl-faidare:masterfrom fix/obsUnit-DbIdselixir-europe/plant-brapi-etl-faidare:fix/obsUnit-DbIdsCopy head branch name to clipboard

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Commits on Jun 7, 2024

• Remove deprecated dependencies

  cpommier

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Commits on Jun 21, 2024

• Base64 encoding for DbId fields of other document types within observationUnit documents (still observationVariableDbId). fix GNP-6529

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• Encoding all concerned DbId to base64 in observationUnit documents using a stack for handling data structures values. fix GNP-6529

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Commits on Jun 24, 2024

• correcting some typing errors. fix GNP-6529

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• Update datadiscovery_cards.py

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Commits on Jul 9, 2024

• The observationVariableDbId is not ebase64 encoded anymore. fix GNP-6542

  nlakmouri

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• Handle DbId to not be encoded when their names are none or empty. fix GNP-6541

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Commits on Jul 16, 2024

• Change the _handle_DbId_URI method. fix GNP-6529

  nlakmouri

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• Merge branch 'fix/obsUnit-DbIds' of github.com:elixir-europe/plant-brapi-etl-faidare into fix/obsUnit-DbIds

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• Forcing to Python 3.12

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• Correcting integration tests

  cpommier

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• Correcting integration tests

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• Change test_basic_function

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• Change test_basic_mapping

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• Change test_season_transform

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• Change test_germplasmName_transform

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• Merge pull request #73 from elixir-europe/feat/upgradeToPython3.12

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Commits on Jul 20, 2024

• Handling PHIS generating JSON and not JSON lines

  cpommier

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• Handling study URL, needed from studyCards

  cpommier

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Commits on Jul 31, 2024

• Add the make_hashable method to resolve unhashable type error

  nlakmouri

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• Merge pull request #74 from elixir-europe/feat/upgradeToPython3.12

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Commits on Aug 1, 2024

• Add unit tests for observationUnit documents. Fix GNP-6543

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Commits on Aug 2, 2024

• Correct the expected study document for tests: add the url item

  nlakmouri

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Commits on Aug 12, 2024

• Enhance observationUnit unit tests: sort JSON lists before comparing to expected output. GNP-6543

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Commits on Aug 16, 2024

• Comment the _handle_DbId_URI method

  nlakmouri

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• Rectify the name of the expected ZIP file for the observation_unit test.

  nlakmouri

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• Merge pull request #75 from elixir-europe/feat/upgradeToPython3.12

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Commits on Nov 8, 2024

• Cleaning obsolete code and removing corresponding tests.

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Commits on Nov 29, 2024

• transform germplasm synonyms and institute

  nlakmouri

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Commits on Dec 3, 2024

• Correct typo in transform institute method name

  nlakmouri

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• Merge pull request #76 from elixir-europe/fix/synonymsV2Mapping

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Commits on Dec 18, 2024

• Better handling of JSON to JSONL conversion by adding 'brapi:static-file-type' field in source files

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Commits on Jan 7, 2025

• Merge pull request #77 from elixir-europe/fix/synonymsV2Mapping

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Commits on Jan 9, 2025

• Comment make_hashable() method and add SynonymsV2 to datadiscovery. Fix GNP-6529

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• Merge pull request #78 from elixir-europe/fix/synonymsV2Mapping

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• Merge pull request #79 from elixir-europe/fix/germplasmMapping

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Commits on Jan 14, 2025

• Fix VIB source json to include brapi:static-file-type field

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Commits on Jan 17, 2025

• Fix etl tests

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