Add Python 3.13 support

emdgroup · Nov 12, 2024 · 36f86da · 36f86da
1 parent 63fdaff
commit 36f86da
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Showing 8 changed files with 32 additions and 25 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -78,7 +78,7 @@ jobs:
   lint:
     strategy:
       matrix:
-        py-version: [ {semantic: '3.12', tox: 'py312'} ]
+        py-version: [ {semantic: '3.13', tox: 'py313'} ]
     name: Lint ${{ matrix.py-version.semantic }}
     runs-on: ubuntu-latest
     steps:
@@ -113,7 +113,7 @@ jobs:
     needs: [lint]
     strategy:
       matrix:
-        py-version: [ {semantic: '3.12', tox: 'py312'} ]
+        py-version: [ {semantic: '3.13', tox: 'py313'} ]
     name: Type Check ${{ matrix.py-version.semantic }}
     runs-on: ubuntu-latest
     steps:
@@ -131,7 +131,7 @@ jobs:
     needs: [lint]
     strategy:
       matrix:
-        py-version: [ {semantic: '3.12', tox: 'py312'} ]
+        py-version: [ {semantic: '3.13', tox: 'py313'} ]
     name: Audit ${{ matrix.py-version.semantic }}
     runs-on: ubuntu-latest
     steps:
@@ -171,7 +171,7 @@ jobs:
     needs: [typecheck, audit]
     strategy:
       matrix:
-        py-version: [ {semantic: '3.10', tox: 'py310'}, {semantic: '3.12', tox: 'py312'} ]
+        py-version: [ {semantic: '3.10', tox: 'py310'}, {semantic: '3.13', tox: 'py313'} ]
     name: Full Tests ${{ matrix.py-version.semantic }}
     runs-on: ubuntu-latest
     steps:

diff --git a/.github/workflows/regular.yml b/.github/workflows/regular.yml
@@ -53,7 +53,8 @@ jobs:
       matrix:
         py-version: [ {semantic: '3.10', tox: 'py310'},
                       {semantic: '3.11', tox: 'py311'},
-                      {semantic: '3.12', tox: 'py312'} ]
+                      {semantic: '3.12', tox: 'py312'},
+                      {semantic: '3.13', tox: 'py313'} ]
     name: Lint ${{ matrix.py-version.semantic }}
     runs-on: ubuntu-latest
     steps:
@@ -74,7 +75,8 @@ jobs:
       matrix:
         py-version: [ {semantic: '3.10', tox: 'py310'},
                       {semantic: '3.11', tox: 'py311'},
-                      {semantic: '3.12', tox: 'py312'} ]
+                      {semantic: '3.12', tox: 'py312'},
+                      {semantic: '3.13', tox: 'py313'} ]
     name: Type Check ${{ matrix.py-version.semantic }}
     runs-on: ubuntu-latest
     steps:
@@ -95,7 +97,8 @@ jobs:
       matrix:
         py-version: [ {semantic: '3.10', tox: 'py310'},
                       {semantic: '3.11', tox: 'py311'},
-                      {semantic: '3.12', tox: 'py312'} ]
+                      {semantic: '3.12', tox: 'py312'},
+                      {semantic: '3.13', tox: 'py313'} ]
     name: Audit ${{ matrix.py-version.semantic }}
     runs-on: ubuntu-latest
     steps:
@@ -116,7 +119,8 @@ jobs:
       matrix:
         py-version: [ {semantic: '3.10', tox: 'py310'},
                       {semantic: '3.11', tox: 'py311'},
-                      {semantic: '3.12', tox: 'py312'} ]
+                      {semantic: '3.12', tox: 'py312'},
+                      {semantic: '3.13', tox: 'py313'} ]
     name: Core Tests ${{ matrix.py-version.semantic }}
     runs-on: ubuntu-latest
     steps:
@@ -137,7 +141,8 @@ jobs:
       matrix:
         py-version: [ {semantic: '3.10', tox: 'py310'},
                       {semantic: '3.11', tox: 'py311'},
-                      {semantic: '3.12', tox: 'py312'} ]
+                      {semantic: '3.12', tox: 'py312'},
+                      {semantic: '3.13', tox: 'py313'} ]
     name: Full Tests ${{ matrix.py-version.semantic }}
     runs-on: ubuntu-latest
     steps:

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
@@ -26,7 +26,7 @@ jobs:
           fetch-depth: 0
       - uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
       - name: Clean
         run: |
           python -c 'import shutil; [shutil.rmtree(p, True) for p in ("build", "dist")]'
@@ -76,7 +76,7 @@ jobs:
       - uses: actions/setup-python@v5
         id: setup-python
         with:
-          python-version: '3.12'
+          python-version: '3.13'
       - name: Install test-package
         run: |
           pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ baybe==${{  github.ref_name }}

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -6,6 +6,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 ### Added
+- Support for Python 3.13
 - `allow_missing` and `allow_extra` keyword arguments to `Objective.transform`
 - Example for a traditional mixture
 - `add_noise_to_perturb_degenerate_rows` utility

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
@@ -49,13 +49,13 @@ we recommend the following workflow:
    You can retrieve all available environments via `tox list`.
    For more information, see our [README about tests](https://github.com/emdgroup/baybe/blob/main/tests/README.md).
 
-   For instance, running all code tests in Python 3.12 can be achieved via:
+   For instance, running all code tests in Python 3.13 can be achieved via:
    ```console
-   tox -e fulltest-py312
+   tox -e fulltest-py313
    ```
 
-   Other tox tests that are useful to verify your work locally are `tox -e lint-py312`,
-   `tox -e mypy-py312` and `tox -e coretest-py312`.
+   Other tox tests that are useful to verify your work locally are `tox -e lint-py313`,
+   `tox -e mypy-py313` and `tox -e coretest-py313`.
 
    If you want to challenge your machine, you can run all checks in all Python versions
    in parallel via:

diff --git a/pyproject.toml b/pyproject.toml
@@ -16,6 +16,7 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
     "Operating System :: OS Independent",
     "Typing :: Typed",
 ]

diff --git a/tests/README.md b/tests/README.md
@@ -68,13 +68,13 @@ tox -e fulltest-py310
 ``` 
 will run pytest on baybe with all optional features in python 3.10, while 
 ```bash
-tox -e coretest-py312
+tox -e coretest-py313
 ```
-will run pytest on baybe without additional features in python 3.12.
+will run pytest on baybe without additional features in python 3.13.
 ```bash
-tox -e lint-py312
+tox -e lint-py313
 ```
-will run the linters with python 3.12.
+will run the linters with python 3.13.
 
 For a full overview of all available environments, type:
 ```

diff --git a/tox.ini b/tox.ini
@@ -1,9 +1,9 @@
 [tox]
 min_version = 4.9
-env_list = {fulltest,coretest,lint,mypy,audit}-py{310,311,312}
+env_list = {fulltest,coretest,lint,mypy,audit}-py{310,311,312,313}
 isolated_build = True
 
-[testenv:fulltest,fulltest-py{310,311,312}]
+[testenv:fulltest,fulltest-py{310,311,312,313}]
 description = Run PyTest with all extra functionality
 extras = chem,examples,lint,onnx,polars,simulation,test
 passenv =
@@ -17,7 +17,7 @@ commands =
     python --version
     pytest -p no:warnings --cov=baybe --durations=5 {posargs}
 
-[testenv:coretest,coretest-py{310,311,312}]
+[testenv:coretest,coretest-py{310,311,312,313}]
 description = Run PyTest with core functionality
 extras = test
 passenv =
@@ -31,7 +31,7 @@ commands =
     python --version
     pytest -p no:warnings --cov=baybe --durations=5 {posargs}
 
-[testenv:lint,lint-py{310,311,312}]
+[testenv:lint,lint-py{310,311,312,313}]
 description = Run linters and format checkers
 extras = lint,examples
 skip_install = True
@@ -40,7 +40,7 @@ commands =
     python --version
     pre-commit run --all-files {posargs:--show-diff-on-failure}
 
-[testenv:mypy,mypy-py{310,311,312}]
+[testenv:mypy,mypy-py{310,311,312,313}]
 description = Run mypy
 extras = mypy
 setenv =
@@ -49,7 +49,7 @@ commands =
     python --version
     mypy
 
-[testenv:audit,audit-py{310,311,312}]
+[testenv:audit,audit-py{310,311,312,313}]
 description = Run pip-audit
 extras = dev # audit entire environment
 setenv =