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kmexter authored Dec 4, 2024
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| **EMO BON record** | A digital representation of a sampling event, capturing the relevant data and metadata associated with it. There is no fixed idea of what is included in an EMO BON record, as that depends on the system that these records are being held in; for example, EMO BON records in EurOBIS and in Blue Cloud will not necessarily be the same. |
| **Catalogue asset** | The smallest unit of "EMOBON dataset" that goes into a datasets metadata catalogue, i.e. a specific "EMO BON record" in a specific catalogue. Can be a single data file or a set of files.|
| **EMO BON Repository** | A GitHub repository* that contains EMO BON data and metadata. | *A GitHub repository represents a storage location for files and their version histroy, managed using Git version control which allows users to track changes, collaborate with others, and maintain a complete record of the project's development over time. |
| **EMO BON RO-Crate** | EMO BON ro-crates* contain data associated with: logsheets from observatories, MetaGOflow runs, sequencing metadata. Usually our ro-crates are single repositories, but for some one repositoriy contains multiple ro-crates. A ro-crate is manifested via a ro-crate-metadata.json file | *An Ro-crate is a collection of data files, metadata, and contextual information that organises research data in a structured format, enabling easy sharing, reuse, and understanding in both machine-readable and human-readable forms. |
| **EMO BON RO-Crate** | EMO BON ro-crates* contain data associated with: logsheets from observatories, MetaGOflow runs, sequencing metadata. Usually our ro-crates are single repositories, but for some one repositoriy contains multiple ro-crates. A ro-crate is manifest via a ro-crate-metadata.json file | *An Ro-crate is a collection of data files, metadata, and contextual information that organises research data in a structured format, enabling easy sharing, reuse, and understanding in both machine-readable and human-readable forms. |
| **EM BON ro-crate-metadata.json** | A ro-crate-metadata.json file* describes the contents of an EMO BON RO-Crate. | *A rocrate-metadata.json file is a JSON-LD file that provides a detailed description of the contents and structure of an RO-Crate. It maps relationships between files and their metadata, ensuring traceability, context, and purpose for data within research workflows.|
| **sequence** | A DNA string. Specifically, we mean (raw) sequences as produced from the material samples by Genoscope and held on their cloud drive and then archived on ENA. |
| **processed sequences / OTUs / ASVs** | These are sequences that have been processed by a bioinformatics code to a stage where they can be/have been compared to taxonomic reference libraries. |
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