Merge branch 'pangolin-nextclade-bumps' into 'dev'

Bumping pangolin & nextclade & adding nextclade data See merge request epi2melabs/workflow-containers/wf-artic!114
epi2me-labs · Jul 13, 2022 · a60a1e1 · a60a1e1
2 parents 60d479d + af109f5
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,6 +4,11 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [v0.3.18]
+### Changes
+- pangolin to v4.1.1
+- nextclade data updated
+
 ## [v0.3.17]
 ### Changes
 - Args parser for fastqingress

diff --git a/...clade/datasets/sars-cov-2/references/MN908947/versions/2021-11-16T16:38:05Z/files/qc.json b/...clade/datasets/sars-cov-2/references/MN908947/versions/2021-11-16T16:38:05Z/files/qc.json
@@ -75,7 +75,6 @@
       { "geneName": "ORF7a", "codon": 93 },
       { "geneName": "ORF7a", "codon": 94 },
       { "geneName": "ORF7a", "codon": 120 },
-      { "geneName": "ORF7b", "codon": 2 },
       { "geneName": "ORF7b", "codon": 32 },
       { "geneName": "ORF7b", "codon": 38 },
       { "geneName": "ORF8", "codon": 17 },

diff --git a/...tasets/sars-cov-2/references/MN908947/versions/2021-11-16T16:38:05Z/files/sequences.fasta b/...tasets/sars-cov-2/references/MN908947/versions/2021-11-16T16:38:05Z/files/sequences.fasta