Vectorise ebola model #42
Workflow file for this run
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# Modified to follow workflow in EpiNow2 | |
name: Continuous Benchmarks (Receive) | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.head_ref }} | |
cancel-in-progress: true | |
on: | |
pull_request: | |
paths: | |
# Where model code is defined: R/, src/, inst/include/ | |
- "inst/include/**" | |
- "src/**" | |
- "R/**" | |
# Benchmarking code, config file, and manual trigger | |
- "touchstone/**" | |
- ".github/workflows/touchstone-*.yaml" | |
- ".benchmark" | |
jobs: | |
prepare: | |
runs-on: ubuntu-latest | |
# Allow benchmarking workflow to run for external contribs | |
outputs: | |
config: ${{ steps.read_touchstone_config.outputs.config }} | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- id: read_touchstone_config | |
run: | | |
content=`cat ./touchstone/config.json` | |
# the following lines are only required for multi line json | |
content="${content//'%'/'%25'}" | |
content="${content//$'\n'/'%0A'}" | |
content="${content//$'\r'/'%0D'}" | |
# end of optional handling for multi line json | |
echo "::set-output name=config::$content" | |
build: | |
needs: prepare | |
runs-on: ${{ matrix.config.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- ${{ fromJson(needs.prepare.outputs.config) }} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
RSPM: ${{ matrix.config.rspm }} | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: lorenzwalthert/touchstone/actions/receive@v1 | |
with: | |
cache-version: 1 | |
benchmarking_repo: ${{ matrix.config.benchmarking_repo }} | |
benchmarking_ref: ${{ matrix.config.benchmarking_ref }} | |
benchmarking_path: ${{ matrix.config.benchmarking_path }} |