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Fix vaccination leading to negative susceptibles #123

Fix vaccination leading to negative susceptibles

Fix vaccination leading to negative susceptibles #123

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
workflow_dispatch:
pull_request:
branches: [main, master]
paths:
- '**.R'
- '**.Rmd'
- '**/.lintr'
- '**/.lintr.R'
name: lint-changed-files
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
lint-changed-files:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: |
any::gh
any::lintr
any::purrr
epiverse-trace/etdev
needs: check
- name: Install package
run: R CMD INSTALL .
- name: Extract and lint files changed by this PR
run: |
files <- gh::gh("/repos/${{ github.repository }}/pulls/${{ github.event.pull_request.number }}/files")
changed_files <- purrr::map_chr(files, "filename")
all_files <- list.files(recursive = TRUE)
exclusions_list <- as.list(setdiff(all_files, changed_files))
lintr::lint_package(exclusions = exclusions_list)
shell: Rscript {0}
env:
LINTR_ERROR_ON_LINT: true