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Use incidence2 + MASS directly instead of i2extras #157

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merged 6 commits into from
Jun 18, 2024
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@Bisaloo Bisaloo commented Jun 17, 2024

Fix #156

Functional changes:

  • use of a negbin model instead of a poisson model, as suggested in the comment
  • Tim added as ctb

All the rest should remain the same.

@Bisaloo Bisaloo requested a review from TimTaylor June 17, 2024 15:30
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It may be worth dropping the reference to doubling/halving times. This was part of the growth_rate() function but not present in the reworking. Code is here if you want to implement.

I've not tried to render locally but, apart from the comment above, all seems OK.

@Bisaloo Bisaloo merged commit bc0fa1f into main Jun 18, 2024
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@Bisaloo Bisaloo deleted the rm-i2extras branch June 18, 2024 13:50
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Remove i2extras usage
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