Use JsonModelsInterface in ersilia CLI (#1213) #897

	name: Test Colab Notebook

	on:
	push:
	workflow_dispatch:

	jobs:
	test-colab-notebook:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # pin@v3.5.3
	- name: Add conda to system path
	run: echo $CONDA/bin >> $GITHUB_PATH

	- name: Source conda
	run: source $CONDA/etc/profile.d/conda.sh

	- name: Set Python to 3.10.10
	run:
	conda install -y python=3.10.10

	- name: Install dependencies
	run: \|
	source activate
	conda init
	conda install google-colab -c conda-forge
	jupyter --version
	pip install --upgrade nbconvert nbformat jsonschema pandas

	- name: Test Google Colab Notebook with CLI shell commands
	run: \|
	jupyter nbconvert --to notebook --execute notebooks/test-colab-notebook-cli.ipynb --output=output-cli.ipynb --ExecutePreprocessor.timeout=-1

	- name: Test Google Colab Notebook with Python API commands
	run: \|
	echo "Skipping Python API notebook due to unresolved issue"
	#jupyter nbconvert --to notebook --execute notebooks/test-colab-notebook-python-api.ipynb --output=output-python-api.ipynb --ExecutePreprocessor.timeout=-1

	- name: Upload Output of the Google Colab Notebook CLI
	uses: actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808 # pin@v4.3.3
	with:
	name: output-cli.ipynb
	path: notebooks/output-cli.ipynb
	retention-days: 7

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