Merge pull request #811 from ersilia-os/dependabot/github_actions/act…

…ions/checkout-4.1.0

Bump actions/checkout from 4.0.0 to 4.1.0

.github/workflows/approve-dispatch.yml

@@ -13,7 +13,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+        uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       # parse the issue body from free form text to a structured JSON object
       - name: parse issue
@@ -81,7 +81,7 @@ jobs:
 
       # upload git-lfs object
       - name: checkout persist credentials
-        uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+        uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
         with:
           persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token
           fetch-depth: 0 # otherwise, you will failed to push refs to dest repo

.github/workflows/install.yml

@@ -15,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac
+    - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@61a6322f88396a6271a6ee3565807d608ecaddd1
       with:
@@ -35,7 +35,7 @@ jobs:
         python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac
+    - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@61a6322f88396a6271a6ee3565807d608ecaddd1
       with:
@@ -57,7 +57,7 @@ jobs:
         platform: [ubuntu-latest, macos-latest]
     runs-on: ${{ matrix.platform }}
     steps:
-      - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+      - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       - name: Add conda to system path
         run: echo $CONDA/bin >> $GITHUB_PATH

.github/workflows/json-check.yml

@@ -15,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: checkout
-        uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+        uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       - name: json syntax check
         uses: GrantBirki/json-yaml-validate@1652fde01b1be71dfa7131148819e67639792673 # pin@v2.3.0

.github/workflows/pr_check.yml

@@ -15,7 +15,7 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+      - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       - name: Add conda to system path
         run: echo $CONDA/bin >> $GITHUB_PATH

.github/workflows/predict-model-input.yml

@@ -18,7 +18,7 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+      - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       - name: Add conda to system path
         run: echo $CONDA/bin >> $GITHUB_PATH

.github/workflows/predict-model.yml

@@ -16,7 +16,7 @@ jobs:
         count: [0, 1, 2, 3, 4]
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+      - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       - name: Add conda to system path
         run: echo $CONDA/bin >> $GITHUB_PATH

.github/workflows/python-publish.yml

@@ -15,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+      - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       - name: Set up Python
         uses: actions/setup-python@61a6322f88396a6271a6ee3565807d608ecaddd1 # pin@v4.7.0

.github/workflows/quick-manual-model-test.yml

@@ -18,7 +18,7 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+      - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       - name: Add conda to system path
         run: echo $CONDA/bin >> $GITHUB_PATH

.github/workflows/tag-to-version.yml

@@ -13,7 +13,7 @@ jobs:
 
     steps:
       - name: Checkout persist credentials
-        uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+        uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
         with:
           persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token
           fetch-depth: 0 # otherwise, you will failed to push refs to dest repo

.github/workflows/test-colab.yml

@@ -8,7 +8,7 @@ jobs:
   test-colab-notebook:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+      - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
       - name: Add conda to system path
         run: echo $CONDA/bin >> $GITHUB_PATH
 

.github/workflows/test.yml

@@ -11,7 +11,7 @@ jobs:
   test:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+      - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       - name: Add conda to system path
         run: echo $CONDA/bin >> $GITHUB_PATH

.github/workflows/write_secrets.yml

@@ -21,7 +21,7 @@ jobs:
     # Steps represent a sequence of tasks that will be executed as part of the job
     steps:
       # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-      - uses: actions/checkout@3df4ab11eba7bda6032a0b82a6bb43b11571feac # pin@v3.5.3
+      - uses: actions/checkout@8ade135a41bc03ea155e62e844d188df1ea18608 # pin@v3.5.3
 
       # Write json file
       - name: Write secrets to json file