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Format code by ruff formatter
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espdev committed Jun 30, 2024
1 parent 277eeec commit 2a2b1f3
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Showing 11 changed files with 334 additions and 208 deletions.
2 changes: 0 additions & 2 deletions csaps/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,15 +13,13 @@
# Shortcut
'csaps',
'AutoSmoothingResult',

# Classes
'ISplinePPForm',
'ISmoothingSpline',
'SplinePPForm',
'NdGridSplinePPForm',
'CubicSmoothingSpline',
'NdGridCubicSmoothingSpline',

# Type-hints
'UnivariateDataType',
'MultivariateDataType',
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15 changes: 5 additions & 10 deletions csaps/_base.py
Original file line number Diff line number Diff line change
Expand Up @@ -11,8 +11,7 @@


class ISplinePPForm(abc.ABC, Generic[TData, TProps]):
"""The interface class for spline representation in PP-form
"""
"""The interface class for spline representation in PP-form"""

__module__ = 'csaps'

Expand Down Expand Up @@ -84,24 +83,20 @@ def shape(self) -> Tuple[int, ...]:


class ISmoothingSpline(abc.ABC, Generic[TSpline, TSmooth, TXi, TNu, TExtrapolate]):
"""The interface class for smooting splines
"""
"""The interface class for smooting splines"""

__module__ = 'csaps'

@property
@abc.abstractmethod
def smooth(self) -> TSmooth:
"""Returns smoothing factor(s)
"""
"""Returns smoothing factor(s)"""

@property
@abc.abstractmethod
def spline(self) -> TSpline:
"""Returns spline representation in PP-form
"""
"""Returns spline representation in PP-form"""

@abc.abstractmethod
def __call__(self, xi: TXi, nu: Optional[TNu] = None, extrapolate: Optional[TExtrapolate] = None) -> np.ndarray:
"""Evaluates spline on the data sites
"""
"""Evaluates spline on the data sites"""
2 changes: 1 addition & 1 deletion csaps/_reshape.py
Original file line number Diff line number Diff line change
Expand Up @@ -150,7 +150,7 @@ def umv_coeffs_to_flatten(arr: np.ndarray):
strides = arr.strides[:-3:-1]
arr_view = as_strided(arr, shape=shape, strides=strides)
else: # pragma: no cover
raise ValueError(f"The array ndim must be 2 or 3, but given array has ndim={arr.ndim}.")
raise ValueError(f'The array ndim must be 2 or 3, but given array has ndim={arr.ndim}.')

return arr_view

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12 changes: 5 additions & 7 deletions csaps/_sspndg.py
Original file line number Diff line number Diff line change
Expand Up @@ -62,11 +62,11 @@ def coeffs(self) -> np.ndarray:

@property
def order(self) -> Tuple[int, ...]:
return self.c.shape[:self.c.ndim // 2]
return self.c.shape[: self.c.ndim // 2]

@property
def pieces(self) -> Tuple[int, ...]:
return self.c.shape[self.c.ndim // 2:]
return self.c.shape[self.c.ndim // 2 :]

@property
def ndim(self) -> int:
Expand Down Expand Up @@ -112,7 +112,7 @@ def __call__(
raise ValueError(f"'x' sequence must have length {self.ndim} according to 'breaks'")

if nu is None:
nu = (0, ) * len(x)
nu = (0,) * len(x)

if extrapolate is None:
extrapolate = True
Expand Down Expand Up @@ -210,7 +210,6 @@ def __init__(
smooth: Optional[Union[float, Sequence[Optional[float]]]] = None,
normalizedsmooth: bool = False,
) -> None:

x, y, w, s = self._prepare_data(xdata, ydata, weights, smooth)
coeffs, smooth = self._make_spline(x, y, w, s, normalizedsmooth)

Expand Down Expand Up @@ -306,8 +305,7 @@ def _prepare_data(cls, xdata, ydata, weights, smooth):

if len(smooth) != data_ndim:
raise ValueError(
'Number of smoothing parameter values must '
f'be equal number of dimensions ({data_ndim})'
'Number of smoothing parameter values must ' f'be equal number of dimensions ({data_ndim})'
)

return xdata, ydata, weights, smooth
Expand All @@ -324,7 +322,7 @@ def _make_spline(xdata, ydata, weights, smooth, normalizedsmooth):
smooth=smooth[0],
normalizedsmooth=normalizedsmooth,
)
return s.spline.coeffs, (s.smooth, )
return s.spline.coeffs, (s.smooth,)

shape = ydata.shape
coeffs = ydata
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24 changes: 11 additions & 13 deletions csaps/_sspumv.py
Original file line number Diff line number Diff line change
Expand Up @@ -58,8 +58,7 @@ def ndim(self) -> int:

@property
def shape(self) -> Tuple[int, ...]:
"""Returns the source data shape
"""
"""Returns the source data shape"""
shape: List[int] = list(self.c.shape[2:])
shape.insert(self.axis, self.c.shape[1] + 1)

Expand Down Expand Up @@ -124,7 +123,6 @@ def __init__(
axis: int = -1,
normalizedsmooth: bool = False,
):

x, y, w, shape, axis = self._prepare_data(xdata, ydata, weights, axis)
coeffs, smooth = self._make_spline(x, y, w, smooth, shape, normalizedsmooth)
spline = SplinePPForm.construct_fast(coeffs, x, axis=axis)
Expand Down Expand Up @@ -236,7 +234,7 @@ def _compute_smooth(a, b):
def trace(m: sp.dia_matrix):
return m.diagonal().sum()

return 1. / (1. + trace(a) / (6. * trace(b)))
return 1.0 / (1.0 + trace(a) / (6.0 * trace(b)))

@staticmethod
def _normalize_smooth(x: np.ndarray, w: np.ndarray, smooth: Optional[float]):
Expand All @@ -246,8 +244,8 @@ def _normalize_smooth(x: np.ndarray, w: np.ndarray, smooth: Optional[float]):

span = np.ptp(x)

eff_x = 1 + (span**2) / np.sum(np.diff(x)**2)
eff_w = np.sum(w)**2 / np.sum(w**2)
eff_x = 1 + (span**2) / np.sum(np.diff(x) ** 2)
eff_w = np.sum(w) ** 2 / np.sum(w**2)
k = 80 * (span**3) * (x.size**-2) * (eff_x**-0.5) * (eff_w**-0.5)

s = 0.5 if smooth is None else smooth
Expand Down Expand Up @@ -281,11 +279,11 @@ def _make_spline(x, y, w, smooth, shape, normalizedsmooth):
diags_r = np.vstack((dx[1:], 2 * (dx[1:] + dx[:-1]), dx[:-1]))
r = sp.spdiags(diags_r, [-1, 0, 1], pcount - 2, pcount - 2)

dx_recip = 1. / dx
dx_recip = 1.0 / dx
diags_qtw = np.vstack((dx_recip[:-1], -(dx_recip[1:] + dx_recip[:-1]), dx_recip[1:]))
diags_sqrw_recip = 1. / np.sqrt(w)
diags_sqrw_recip = 1.0 / np.sqrt(w)

qtw = (sp.diags(diags_qtw, [0, 1, 2], (pcount - 2, pcount)) @ sp.diags(diags_sqrw_recip, 0, (pcount, pcount)))
qtw = sp.diags(diags_qtw, [0, 1, 2], (pcount - 2, pcount)) @ sp.diags(diags_sqrw_recip, 0, (pcount, pcount))
qtw = qtw @ qtw.T

p = smooth
Expand All @@ -295,7 +293,7 @@ def _make_spline(x, y, w, smooth, shape, normalizedsmooth):
elif smooth is None:
p = CubicSmoothingSpline._compute_smooth(r, qtw)

pp = (6. * (1. - p))
pp = 6.0 * (1.0 - p)

# Solve linear system for the 2nd derivatives
a = pp * qtw + p * r
Expand All @@ -314,15 +312,15 @@ def _make_spline(x, y, w, smooth, shape, normalizedsmooth):
d1 = np.diff(vpad(u), axis=0) / dx
d2 = np.diff(vpad(d1), axis=0)

diags_w_recip = 1. / w
diags_w_recip = 1.0 / w
w = sp.diags(diags_w_recip, 0, (pcount, pcount))

yi = y.T - (pp * w) @ d2
pu = vpad(p * u)

c1 = np.diff(pu, axis=0) / dx
c2 = 3. * pu[:-1, :]
c3 = np.diff(yi, axis=0) / dx - dx * (2. * pu[:-1, :] + pu[1:, :])
c2 = 3.0 * pu[:-1, :]
c3 = np.diff(yi, axis=0) / dx - dx * (2.0 * pu[:-1, :] + pu[1:, :])
c4 = yi[:-1, :]

c_shape = (4, pcount - 1) + shape[1:]
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5 changes: 3 additions & 2 deletions docs/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,7 @@

def _get_version():
from csaps import __version__

return __version__


Expand Down Expand Up @@ -54,10 +55,10 @@ def _get_version():
'figure.autolayout': 'True',
'figure.figsize': '5, 3.5',
'savefig.bbox': 'tight',
'savefig.facecolor': "None",
'savefig.facecolor': 'None',
}

plot_formats = [("png", 90)]
plot_formats = [('png', 90)]
plot_include_source = True
plot_html_show_source_link = False
plot_html_show_formats = False
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