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Update NEWS.md
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ethanbass committed Dec 18, 2023
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# chromatographR 0.7.0

* Updated `correct_peaks` function so it works properly for correcting retention times in peak lists.
* Added `fixed_levels` argument to `reshape_peaktable` so features can be plotted in the order they're provided by the user.
* Updated `correct_peaks` function so it works properly to correct retention times in peak lists.
* Added option for summing split peaks using the `merge_peaks` function by selecting `method = "sum"`.
* Updated `get_peaktable` so that the `use.cor` argument works correctly (to use corrected retention times stored in a separate column).
* Fixed `mirror_plot` so it can take numeric input for lambdas.
* Changed default setting of `verbose` argument in `correct_rt` from `FALSE`
to default setting.
* Removed `load_chroms` function. Use `read_chroms` instead.
* Eliminated spurious warning from `attach_ref_spectra` function.
* Changed name of `index` argument in `plot.peak_list` to `idx`. The original argument is now deprecated.
* Fixed bug affecting `plot_purity` argument in `plot.peak_list`.
* Fixed bug in `reshape_chroms` so empty metadata column no longer appears.
* Added additional tests.

#### Refactoring of `cluster_spectra` function:

Expand All @@ -17,7 +21,7 @@ to default setting.
* Saving to RDS is now turned off by default.
* The `pvclust` package is now suggested instead of required.

#### Updates to vignette
#### Updates to vignette and documentation

* Suggest numeric input to lambdas instead of character input to reduce unnecessary confusion.

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