v0.7.0 #31
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v0.7.0 #31
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- cloned predict ptw function
- changed default verbosity to getOption("verbose")
-added `transfer_class` argument to transfer_metadata - allow transfer_metadata` to work with `ptw_list`
try to get eliminate mysterious 0xa font warnings
This reverts commit fe4a466.
- Eliminated extraneous code. - Now requires reference spectra to be attached to peaktable object. - Accordingly, the `chrom_list` argument is no longer needed. - No longer saves RDS by default. - Use `message` instead of `print` for verbose output. - Make `pvclust` suggested instead of required.
- expanded documentation of several functions - bump to v0.7.0
also fixed "purity" plot in plot_peak.list
added test for correct_peaks
updated snapshots
to merge lists when multiple wavelengths are integrated per sample. refactored get_peaks by merging three loops into one
export get_purity
(to make links work in docs)
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chromatographR 0.7.0
correct_peaksfunction so it works properly for correcting retention times in peak lists.fixed_levelsargument toreshape_peaktableso features can be plotted in the order they're provided by the user.merge_peaksfunction by selectingmethod = "sum".get_peaktableso that theuse.corargument works correctly (to use corrected retention times stored in a separate column).mirror_plotso it can take numeric input for lambdas.verboseargument incorrect_rtfromFALSEto default setting.
load_chromsfunction. Useread_chromsinstead.attach_ref_spectrafunction.indexargument inplot.peak_listtoidx. The original argument is now deprecated.plot_purityargument inplot.peak_list.reshape_chromsso empty metadata column no longer appears.plot_spectrumfunction now includes the peak names when plotting spectra.correct_rtso it no longer requires user-providedlambdasfor 1D chromatograms.subset.peak_tablefunction for easily subsetting peak_tables (e.g. to exclude specificpeaks or samples).
whatargument forplot_all_spectra(e.g. to plot multiple spectra at a particular retention time).Refactoring of
cluster_spectrafunction:cluster_spectranow requires reference spectra to be attached to peak table.chrom_listargument is no longer needed.pvclustpackage is now suggested instead of being required.Updates to vignette and documentation