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Work on BGC from 2024 LOV visit #356
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Hi folks, @catsch @Sauzede @grgdll @HCBScienceProducts, Could I have some advice with regard to how can I easily identify all variables related to Radiometry in the Erddap list of variables below (the BGC dataset filling the Erddap is from synthetic profiles). I would need this in order to filter out radiometry variables not in R data mode for the "Standard user mode", following recommendation in this issue #280 (comment) List of variables to filterList of erddap BGC dataset from synthetic profile files:
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All variables that contain "up_radiance", "downwelling_par" or "down_irradiance" are radiometry-related. "up_radiance" and "down_irradiance" are followed by 3 numerical digits that give the associated wavelength in nm, if you want to refine your filter.
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awesome ! thanks @HCBScienceProducts ! |
- also fix a bug in pyarrow search_params
- fix deprec warning
- sort private _minimal_vlist property
one more question @catsch @Sauzede @grgdll @HCBScienceProducts : what about CDOM ? |
We are presently waiting for new calibration factors for CDOM or a list of QC=4 from Seabird |
thanks @catsch ! |
do you think we can keep Radiometry in the 'research' user mode ? |
Most of the time, Radiometry is good data (in R mode) |
do you think we can keep Radiometry in the 'research' user mode ?
Yes to radiometry both in 'research' mode with selection like all other variables (only D-mode, QC flags '1', '5', or '8').
On radiometry in 'standard' mode ***@***.***):
Should this rather be R-mode or A-mode or D-mode with QC flags '1', '2', '5', or '8' (instead of R-mode only). I know there's been some DMQC on radiometry done, i.e., D-mode exist (and are better data than the R-mode data).
On CDOM:
No separate treatment on the argopy side should be needed for the 'standard' mode but can be treated like all other variables (no R-mode but only A-mode or D-mode, QC flags '1', '2', '5', or '8').
The CDOM issues are to be resolved on the Argo data management side. Once solved, it may eventually transition from today's "only R-mode and better not be used" towards A-mode or D-mode and can then appear just like any other variable. Same for the 'research mode': No separate treatment of CDOM (or radiometry) needed.
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- fix bug with shortcuts in ArgoIndex file and convention - the ArgoIndex now support the "etc/argo-index/argo_aux-profile_index.txt" index file
- start support for more user mode in BGC
- don't remember why these variables were included, not consistant ...
- based on new utility merge_param_with_param_adjusted
- fix bug in to_index data fetcher method whereby the index could differ from the dataset
- fix bug whereby user mode was not passed to downstream instances when URI was split
- list_standard_variables now return list for phy or bgc dataset - improve consistency of the "variable" vs "parameter" terms usage - fix bug whereby transforming the dataset according to data mode was not allowing delayed mode only and adjusted only variables in a dataset - improve docstrings - limit use of explicit list of parameters, fall back on using the utility list functions
- describe BGC support for expert and research user modes
- fix bug whereby pressure constraint was on pres_adjusted rather than pres for researcu user mode erddap uri
- fix bugs whereby list of parameters was not created when the list of params was in the args
/home/runner/micromamba/envs/argopy-tests/lib/python3.10/site-packages/fsspec/registry.py:279: UserWarning: Your installed version of s3fs is very old and known to cause severe performance issues, see also dask/dask#10276
make sure argovis is only using a single filestore
include standard and research mode for erddap BGC
commit 62ba4cb Merge: 919484e ce6fed9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 13:50:16 2024 +0200 Merge pull request #389 from euroargodev/other-major-breaking-refactoring Implement other than bgc-2024 branch major breaking refactoring for major release v1.0.0 commit ce6fed9 Merge: fa05fa7 919484e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 12:08:02 2024 +0200 Merge branch 'master' into other-major-breaking-refactoring commit fa05fa7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 12:07:02 2024 +0200 Delete test_deprecated.py commit 919484e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:37:21 2024 +0200 Fix ci tests env fix error libmamba Could not solve for environment specs The following packages are incompatible ├─ fsspec 2024.9.0* is requested and can be installed; └─ s3fs 2024.6.1* is not installable because it requires └─ fsspec 2024.6.1 , which conflicts with any installable versions previously reported. critical libmamba Could not solve for environment specs commit 0dc9834 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:31:21 2024 +0200 Add upstream tests with python 3.11 and 3.12 commit a1aedc5 Merge: 747ba13 549d8c3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:25:09 2024 +0200 Merge branch 'master' into other-major-breaking-refactoring commit 549d8c3 Merge: 1e79ec0 2d4785d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:20:42 2024 +0200 Merge pull request #356 from euroargodev/bgc-2024 Work on BGC from 2024 LOV visit commit 2d4785d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 10:30:17 2024 +0200 Remove 45mins timeout for CI tests commit 1797037 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 08:03:22 2024 +0200 Update CI tests data include standard and research mode for erddap BGC commit 82c20c8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 07:44:50 2024 +0200 Update CI tests data commit f7ebc21 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 07:39:34 2024 +0200 Update test_deprecated.py commit 51355c3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 12:08:05 2024 +0200 update CI tests data commit 809adc9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 10:37:20 2024 +0200 Update create_json_assets commit 2ff193f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 10:37:15 2024 +0200 Update argovis_data.py make sure argovis is only using a single filestore commit a73f727 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 10:36:53 2024 +0200 Update CI tests data commit cf41ba4 Merge: 4681d55 1e79ec0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:59:03 2024 +0200 Merge branch 'master' into bgc-2024 commit 4681d55 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:57:32 2024 +0200 Clear CI tests for easier merge with master [skip-ci] commit 1e79ec0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:56:59 2024 +0200 Clear CI tests data for easier merge [skip-ci] commit c9de8b9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:54:43 2024 +0200 Clear CI tests data before merge commit a21a644 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 09:56:26 2024 +0200 Update whats-new.rst commit fe8b91c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 15:38:26 2024 +0200 Update requirements.txt commit 4ae5aab Merge: 0f5a754 b135bfa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 15:36:58 2024 +0200 Merge pull request #394 from euroargodev/releasev0.1.17 Prepare for v0.1.17 Bat Release 🦇 commit b135bfa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 14:16:32 2024 +0200 Update dev env definitions commit 0f5a754 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:54:21 2024 +0200 Update HOW_TO_RELEASE.md [skip-ci] commit 4bc625e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:49:08 2024 +0200 Flake8 commit 34d1a46 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:45:15 2024 +0200 codespell commit 6259011 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:42:32 2024 +0200 Fix CI tests data update commit c5ab622 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:36:15 2024 +0200 Update cheatsheet.rst commit cb66217 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:28:25 2024 +0200 Update cheatsheet PDF commit 10ff2cf Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:50:15 2024 +0200 Update CI tests data commit ec0b14c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:48:41 2024 +0200 Update HOW_TO_RELEASE.md [skip-ci] commit e2df789 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:28:55 2024 +0200 Update static assets commit cffefc0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:28:24 2024 +0200 Update reference_tables.py commit 6cf2644 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:07:15 2024 +0200 Update whats-new.rst commit eb7e689 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:07:12 2024 +0200 Update fetchers.py commit d8121d8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 10:58:12 2024 +0200 Update HOW_TO_RELEASE.md [skip-ci] commit 88ff363 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 10:34:20 2024 +0200 Move to v0.1.17, to Beta commit e48ab55 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 09:47:51 2024 +0200 Update xarray.py don't anticipate too much on the upcoming filter_data_mode replacement commit 29a5cfc Merge: 5a31057 f3b0a56 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 09:45:45 2024 +0200 Merge pull request #388 from euroargodev/deprec-before-major Introduces deprecation warnings before major v1.0.0 release commit f3b0a56 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 08:56:53 2024 +0200 Better deprecation introduction commit 5a31057 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 19 14:15:02 2024 +0200 Pin erddapy for python < 3.10 See ioos/erddapy#359 commit 747ba13 Merge: 37f2495 0095fe6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 18 15:33:08 2024 +0200 Merge branch 'master' into other-major-breaking-refactoring commit 37f2495 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 18 15:32:46 2024 +0200 Update monitored_threadpool.py commit 6d9be49 Merge: 62ece42 0095fe6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 18 15:30:38 2024 +0200 Merge branch 'master' into bgc-2024 commit 2669301 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:46:38 2024 +0200 [skip-ci] commit e87afe1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:32:06 2024 +0200 Create test_deprecated.py Ensure we're having warnings for deprecations commit c319d0a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:31:32 2024 +0200 Update xarray.py fix deprecation warning commit 19daad3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:31:13 2024 +0200 New deprecation for option 'ftp' replaced by 'gdac' commit c890602 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:30:32 2024 +0200 introduce new "OptionDeprecatedWarning" commit 850adf1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 11:14:10 2024 +0200 Deprec for 'dataset' option replaced by 'ds' commit 1371625 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:12:43 2024 +0200 Update whats-new.rst commit a988d79 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:10:43 2024 +0200 Update xarray.py commit acc789e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:08:07 2024 +0200 Update xarray.py
commit 62ba4cb9aae0cd2ef71b13e4b585a9d0d19da53c Merge: 919484e8 ce6fed99 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 13:50:16 2024 +0200 Merge pull request #389 from euroargodev/other-major-breaking-refactoring Implement other than bgc-2024 branch major breaking refactoring for major release v1.0.0 commit ce6fed9992d1692b0a4e698623a1ee469b75f386 Merge: fa05fa78 919484e8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 12:08:02 2024 +0200 Merge branch 'master' into other-major-breaking-refactoring commit fa05fa78446069cf2c483f036cafc5eecf4f9066 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 12:07:02 2024 +0200 Delete test_deprecated.py commit 919484e86ef57c8ed3a8009a1b9d6ed8e1104684 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:37:21 2024 +0200 Fix ci tests env fix error libmamba Could not solve for environment specs The following packages are incompatible ├─ fsspec 2024.9.0* is requested and can be installed; └─ s3fs 2024.6.1* is not installable because it requires └─ fsspec 2024.6.1 , which conflicts with any installable versions previously reported. critical libmamba Could not solve for environment specs commit 0dc9834dbfe770eed7467908fa9bad18d0559ab6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:31:21 2024 +0200 Add upstream tests with python 3.11 and 3.12 commit a1aedc5be403a91374a5bc724419ed744de77728 Merge: 747ba134 549d8c31 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:25:09 2024 +0200 Merge branch 'master' into other-major-breaking-refactoring commit 549d8c3167b69259819e0bcc2cee92afe133f236 Merge: 1e79ec08 2d4785d7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:20:42 2024 +0200 Merge pull request #356 from euroargodev/bgc-2024 Work on BGC from 2024 LOV visit commit 2d4785d79cc5feead2d75271953e501cb79eb43e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 10:30:17 2024 +0200 Remove 45mins timeout for CI tests commit 17970376b346a1ab2ce0144a5cdd1193079d96a9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 08:03:22 2024 +0200 Update CI tests data include standard and research mode for erddap BGC commit 82c20c879868efebb60e2239347ac4a40f877fdb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 07:44:50 2024 +0200 Update CI tests data commit f7ebc219517e1dba28df6ecb1ba3ddfbdaa6616a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 07:39:34 2024 +0200 Update test_deprecated.py commit 51355c3bdf4d946618c437fa8446898241bbf137 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 12:08:05 2024 +0200 update CI tests data commit 809adc988bbb219000d0353103a1e6fd9703e4f0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 10:37:20 2024 +0200 Update create_json_assets commit 2ff193f1e8ef464027482ea8b7ca83666897be39 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 10:37:15 2024 +0200 Update argovis_data.py make sure argovis is only using a single filestore commit a73f72725fa2709691f669790dc092c3434f227e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 10:36:53 2024 +0200 Update CI tests data commit cf41ba4146eeb34b778f6f66cb59a7d890e65f00 Merge: 4681d558 1e79ec08 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:59:03 2024 +0200 Merge branch 'master' into bgc-2024 commit 4681d5587d7a2d697ae1c0bbf21d991c85938418 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:57:32 2024 +0200 Clear CI tests for easier merge with master [skip-ci] commit 1e79ec087d5e836e3d25eec644ba75665c6bd0f1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:56:59 2024 +0200 Clear CI tests data for easier merge [skip-ci] commit c9de8b949482e82d6753f3eb70554b95d15dbc4b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:54:43 2024 +0200 Clear CI tests data before merge commit a21a644eb449bb8a400751927603034a58d35972 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 09:56:26 2024 +0200 Update whats-new.rst commit fe8b91cd12992743a6765ea57f373398d72f3efd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 15:38:26 2024 +0200 Update requirements.txt commit 4ae5aab1f2e29403f59ab944ee3270f0dabf1086 Merge: 0f5a7542 b135bfaa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 15:36:58 2024 +0200 Merge pull request #394 from euroargodev/releasev0.1.17 Prepare for v0.1.17 Bat Release 🦇 commit b135bfaae15fb97ce9eaa9204f57e187a0cd0a6f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 14:16:32 2024 +0200 Update dev env definitions commit 0f5a7542d72fd8af815403630f5d7ef57c6f73dd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:54:21 2024 +0200 Update HOW_TO_RELEASE.md [skip-ci] commit 4bc625ef49b781874328dd40d75e897f31215160 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:49:08 2024 +0200 Flake8 commit 34d1a46d2bac79d52678450709d077bfd6733e0d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:45:15 2024 +0200 codespell commit 62590119e30b4dd477c27865ea437ff5125630aa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:42:32 2024 +0200 Fix CI tests data update commit c5ab62276f4859bdb1ad4ad528e0e40ca8b32df4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:36:15 2024 +0200 Update cheatsheet.rst commit cb66217945ba3d698e4db600eefe6d3f1a712b71 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:28:25 2024 +0200 Update cheatsheet PDF commit 10ff2cfece19fe156a87f12bf01a62177b796780 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:50:15 2024 +0200 Update CI tests data commit ec0b14cca73cd53ce7761411b0d8a32c889af3ce Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:48:41 2024 +0200 Update HOW_TO_RELEASE.md [skip-ci] commit e2df7895b90f39b7202ab544f4f87911fed46b8a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:28:55 2024 +0200 Update static assets commit cffefc01ab57a8f94ba3c7e6482b95e7ee008369 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:28:24 2024 +0200 Update reference_tables.py commit 6cf264492f7c61f43e750e401fd024b695d4d900 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:07:15 2024 +0200 Update whats-new.rst commit eb7e689fcd6e1fde88ebbe4059f845cfa902ab45 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:07:12 2024 +0200 Update fetchers.py commit d8121d8802d2f58c4397d00a649ff5f5299bcc6e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 10:58:12 2024 +0200 Update HOW_TO_RELEASE.md [skip-ci] commit 88ff363c91fd5d4e7c3fe5549f9028def1860bf7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 10:34:20 2024 +0200 Move to v0.1.17, to Beta commit e48ab550d339a48e40858485ef9f876514e7f58a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 09:47:51 2024 +0200 Update xarray.py don't anticipate too much on the upcoming filter_data_mode replacement commit 29a5cfcd5be63f230876abd0abb27c8e071c61e2 Merge: 5a310570 f3b0a56c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 09:45:45 2024 +0200 Merge pull request #388 from euroargodev/deprec-before-major Introduces deprecation warnings before major v1.0.0 release commit f3b0a56c5099995173cfa605969427c2f5bc0aac Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 08:56:53 2024 +0200 Better deprecation introduction commit 5a3105708f6c1494e3e99ca88651487d7cac3302 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 19 14:15:02 2024 +0200 Pin erddapy for python < 3.10 See https://github.com/ioos/erddapy/issues/359 commit 747ba134d797683bafa275da73c8e97c9fa22707 Merge: 37f24952 0095fe60 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 18 15:33:08 2024 +0200 Merge branch 'master' into other-major-breaking-refactoring commit 37f24952dec4c23d12ced7b50331b1a9caa28e7b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 18 15:32:46 2024 +0200 Update monitored_threadpool.py commit 6d9be491158f2da8335031891ebf2e85402f452b Merge: 62ece427 0095fe60 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 18 15:30:38 2024 +0200 Merge branch 'master' into bgc-2024 commit 0095fe606796185e48479c48d3ea36a94bb0d685 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 17 11:03:34 2024 +0200 Allows for low level http fetching errors to be ignored - usefull for a Dask client as a parallel option commit 26693016c881754995f4b848feaae691f1643a4b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:46:38 2024 +0200 [skip-ci] commit 87a996d351e32a377f28cc4b8cd5b6284fd3fb15 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:34:15 2024 +0200 Update options.py improve doctrings commit e87afe1cc0e453a757f920961c26c1572824d466 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:32:06 2024 +0200 Create test_deprecated.py Ensure we're having warnings for deprecations commit c319d0ae3af5eb18a9a4fecebe884430ba102036 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:31:32 2024 +0200 Update xarray.py fix deprecation warning commit 19daad3bb8554b31554c0824ef93e01810f11f3f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:31:13 2024 +0200 New deprecation for option 'ftp' replaced by 'gdac' commit c8906029601cbf5ae35da9ec52e50977462fcad2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:30:32 2024 +0200 introduce new "OptionDeprecatedWarning" commit c6bb528b1c037cb01f7a2c446e594edfec23d734 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 12 16:15:21 2024 +0200 Update static assets commit aa61927728d4f2846f9f256bfddb29c262d590c1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 12 10:22:47 2024 +0200 Update argovis_data.py removing numpy datetime64 utc warning commit a62dc9d0f8bf1e8a9889ad85b219c64133df9cbc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 12 10:22:32 2024 +0200 Update test_xarray_accessor.py commit 46a658615931c226af58443fc491b8483fe629cb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 12 10:22:25 2024 +0200 more ftp to gdac fixing commit a7557049d8428ab32e214bea7ff1f5a96eac6a63 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 11 14:20:02 2024 +0200 Update test_fetchers_facade_data.py commit 86f2edd18c8a93e0438b3d62ecd75c75bb096ad6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 11 11:20:06 2024 +0200 More 'ftp' to 'gdac' refactoring commit 91310fcd1a4315621902a483caee494fd2ebff5f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 16:37:48 2024 +0200 Update checkers.py commit 1b1c35cb9ac39e422810836c6d6e9d49688b06c2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 16:32:20 2024 +0200 Refactor "FtpPathError" into "GdacPathError" commit 623aec8a7727fe95e2de90f950910230e8abb504 Merge: 691c4876 62ece427 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 13:09:23 2024 +0200 Merge branch 'bgc-2024' into other-major-breaking-refactoring commit 691c48762533b0bb4dd860c7c255a2510714b0c9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 13:08:01 2024 +0200 More 'ftp' to 'gdac' refactoring in documentation commit ea0dc614e4f9a8e53040157c4856dac8661490cb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 13:00:54 2024 +0200 More 'ftp' to 'gdac' refactoring commit 07bc71df654b0b0e3ee6f6c4c1c214ee04a55747 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:48:30 2024 +0200 Refactor "ftp" vocab to "gdac" - option "ftp" renamed "gdac" - "FTPArgoDataFetcher" renamed "GDACArgoDataFetcher" - GDAC fetchers argument "ftp" renamed "gdac" - "validate_ftp" renamed "validate_gdac" in options.py commit e2c25fc5449e7bf847272e3b0f2c561fa7e0b101 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:45:17 2024 +0200 upgrade pinned s3fs commit c379d550646df56c80df092e9c569b6b09f3abf0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:26:35 2024 +0200 Refactor "gdacftp_*" modules into "gdac_*" commit 62ece427f01a73bb98d0eeb7dd92f71567f33376 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:23:23 2024 +0200 misc commit 7d103b1c045d08b55257ac79db9f93e7ba74ea6d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:13:48 2024 +0200 Update pytest.ini commit 3875306c19b64645dae4369131717ce67c600786 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:13:18 2024 +0200 s3fs > 2023.12.12 /home/runner/micromamba/envs/argopy-tests/lib/python3.10/site-packages/fsspec/registry.py:279: UserWarning: Your installed version of s3fs is very old and known to cause severe performance issues, see also https://github.com/dask/dask/issues/10276 commit c812f0c4e2767bb5fc4cc8bef73a3f80413589a4 Merge: 942022db 56690321 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:58:30 2024 +0200 Merge branch 'bgc-2024' into other-major-breaking-refactoring commit 56690321c1037f1e2dbb8bf3051f5c52c2d06f18 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:57:19 2024 +0200 update doc [skip-ci] commit d40b7690215791c14adce02780975e424d5e40cb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:34:38 2024 +0200 Update test data commit dc448c8f1874afc99dc2bc63bb1718a63ff4982c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:34:26 2024 +0200 improve logs commit 245e4b0df08b1ed317058137f09cad82b5dfbdd8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:33:57 2024 +0200 Update xarray.py - fix bugs whereby list of parameters was not created when the list of params was in the args commit 4faa1aa72de6e4e7d0a02efc54ace0f1c80d830b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:33:23 2024 +0200 Update format.py - fix bug whereby pressure constraint was on pres_adjusted rather than pres for researcu user mode erddap uri commit 2eec9a6423ee13daba86766cc12f24cdcf3cbcfc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 10:06:38 2024 +0200 Update User mode documentation page - describe BGC support for expert and research user modes commit e72cb63d293d69277e74d8f1899388287fbccfb1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 10:05:05 2024 +0200 fix bugs in variable and parameter lists usage and definition - list_standard_variables now return list for phy or bgc dataset - improve consistency of the "variable" vs "parameter" terms usage - fix bug whereby transforming the dataset according to data mode was not allowing delayed mode only and adjusted only variables in a dataset - improve docstrings - limit use of explicit list of parameters, fall back on using the utility list functions commit 925c1559cbe630d5076cf62d4ac86683420a998d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 09:59:00 2024 +0200 Update erddap_data.py - fix bug whereby user mode was not passed to downstream instances when URI was split commit 942022db6ae3053630f5dfbb437c99ae2c618cec Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 6 09:44:58 2024 +0200 Update fetchers.py commit 868188754ca7171b2b2a08cd13f961fe94ec9dd9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 6 09:35:58 2024 +0200 Update utils.py commit d76a1a52d67a217dec584a3d7375457f45f00c08 Merge: 36fca9e4 09d26995 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 6 09:32:14 2024 +0200 Merge branch 'bgc-2024' into other-major-breaking-refactoring commit 09d269956f151d020b65e923c2f60854b87c4dd1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 16:40:16 2024 +0200 Update utils.py commit a484e301bb7e8f7ae18837d66021c1fbe52f0469 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 16:36:16 2024 +0200 Improve docstrings - and refactored argo_accessor into _argo commit f81842c751fcd62e88f6d77f73a6d29993963c9d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 16:35:25 2024 +0200 Add missing test data commit 29052b3b4ad629bb0e88ff11dfb87e407d87fd75 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 15:56:11 2024 +0200 Update xarray.py - fix bug whereby dataset without PSAL would raise errors with filters assuming all core parameters commit 9affe784751086cd90dd7410101cf50803454eaf Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 15:55:34 2024 +0200 Refactored register_argodataset_accessor into register_argo_accessor commit 58a8258a2b4b3116c99a9d8a972ebca0aa610b33 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 14:52:59 2024 +0200 Update test data commit eac13c5f281a502636f63edea46d67c26dc12e84 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 14:52:45 2024 +0200 improve docstrings commit a7219991ed267f4fe795517952b7233c85aff093 Merge: 62ecdabc 2f2e2dc8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 09:25:09 2024 +0200 Merge branch 'master' into bgc-2024 commit 850adf1cbf13f4df06b74d813ffe5cc2880a4e9d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 11:14:10 2024 +0200 Deprec for 'dataset' option replaced by 'ds' commit 36fca9e4371f83adad73c0602e7f60a6fb717001 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:47:45 2024 +0200 Refactor option "dataset" into "ds" commit 4070159236db17030c2e6234226b09cb33bb24fc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:35:38 2024 +0200 Refactor option "dataset" into "ds" - for consistency with fetcher argument name "ds" commit 62ecdabceea1a4a710874b0d270ca020fee8a649 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:26:31 2024 +0200 Remove filter_data_mode_new This assume that this branch will be merged for the v1.0.0 commit 1371625cdba6ad85493353c51c9413b7d02f52b6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:12:43 2024 +0200 Update whats-new.rst commit a988d797e5c5b0bc979dadeb710fb2dc4eab6f07 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:10:43 2024 +0200 Update xarray.py commit acc789e025a18f5a1d8b5e03629e18f51edb6117 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:08:07 2024 +0200 Update xarray.py commit 2f2e2dc884cf5d3b39aa38339e1027260fc4c60d Merge: 7f3bbb42 bb18f4b0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 09:21:03 2024 +0200 Merge pull request #384 from euroargodev/dependabot/pip/ipython-lte-8.27.0 pip prod(deps): update ipython requirement from <=8.26.0 to <=8.27.0 merging because this only affect the documentation that seems to build ok ! commit 7f3bbb42eb5ccf4082104cda6b52f0d6d770dc0c Merge: f843a75f 47629de3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 08:07:20 2024 +0200 Merge pull request #383 from euroargodev/argovis-use-mock Refactor Argovis CI tests to use mock server commit 47629de3af533f9f5f34ae86e030818a473a3fb1 Merge: 85b86d7c f843a75f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:18:17 2024 +0200 Merge branch 'master' into argovis-use-mock commit 85b86d7c10c7ba6dd3421d559d9f0acb31ce477e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:14:40 2024 +0200 Update whats-new.rst commit f843a75ff2eb7f7434c31d63c6c131db260edbb0 Merge: 5f46ae5c 2cb95931 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:12:26 2024 +0200 Merge pull request #382 from euroargodev/test-data-help Update mocked_http.py commit c28aab81ad69af34fc897421bec4fa3aacec8776 Merge: ad756412 5f46ae5c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:08:02 2024 +0200 Merge branch 'master' into argovis-use-mock commit 5f46ae5c1318383e37ef1fbba6d60766e21100ea Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:06:25 2024 +0200 [skip-ci] commit ad756412305252f098b9da0f26035d304be833aa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 13:29:37 2024 +0200 Update citests_httpdata_manager - fix codeQL commit 6e74d497838627d2a7f3aeaefb6774243c53a1d6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 13:24:53 2024 +0200 Update cheat sheet PDF commit 4c46bc8c2ff815ca31e8bfc4756eddcf4af9cc93 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 13:24:42 2024 +0200 Update xarray.py - fix deprec warning commit 2fdc1850940a4bbf04424239357e34f15c5d0c2b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 13:24:28 2024 +0200 Update documentation - Removed "Comparison of performances" (way too slow, not useful) - New page for cheat sheet - Add icons below logo tor quick helpers - fix some errors in the docs - Update contributing - Add sections to what's new to improve TOC commit 6f681c082677549c549483649569f6e3af863edc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 2 08:54:56 2024 +0200 [skip-ci] commit 5eb412bd758e5ebbe2d4666e23b039c68753b4ee Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 2 08:35:15 2024 +0200 Add missing test data commit bb18f4b061211ed3f44e955b5994cc7b63661bc2 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon Sep 2 04:29:45 2024 +0000 pip prod(deps): update ipython requirement from <=8.26.0 to <=8.27.0 Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/5.0.0...8.27.0) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> commit cc6657b4270174dac63d3148380df08c4f5d88cc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 16:23:19 2024 +0200 Fix argovis to use mock server data commit 564eb8c644c4d110e43aeafa71c91efc84663746 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 16:22:30 2024 +0200 update test data for argovis commit 628d425e0922ec331b3ebf4b03c61c272027cf21 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 15:26:34 2024 +0200 Update fetchers.py raises OptionValueError when trying to fetch argovis data in expert or research mode commit 0264174fe86d852b7b264a6ac3d0a22bda0c19ed Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 15:25:58 2024 +0200 update docstrings commit 2b0e30826a3559ed59f29b0e603558bcfbe1a1c6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 15:25:36 2024 +0200 Update test_fetchers_data_argovis.py - update argovis fetcher CI tests design commit a1f9792acfe2a59bd459e6b0a5217d4c89230f84 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 14:58:58 2024 +0200 Update utils.py commit 36a32381eed464e670288bbfeaa4ceb3bed22938 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 14:58:51 2024 +0200 Update xarray.py fix FutureWarning commit 49b29c1cd8bec78362102f0d957a8e76417ded52 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 12:02:30 2024 +0200 update cheatsheet to v0.1.16 [skip-ci] commit 2b54749f84162f75a09ca943ca81942c716c79ab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 09:52:31 2024 +0200 [skip-ci] commit 8341ecadb313280dfa19925764f2ff43bf7edc4d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 09:47:40 2024 +0200 Update cheatsheet PDF [skip-ci] commit 76da448555457d7ec99fd5fcd5168ca2b601dcbf Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 28 15:56:23 2024 +0200 Update mocked_http.py commit 2cb95931eb0850362420f2f57e75a872f433faab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 28 15:40:49 2024 +0200 Update mocked_http.py - Clean up docstrings - More verbose error message when test data folder is not found - Flake8 + Black this file commit da3beaa342213bb1658a7a63638e7ec9fe094843 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 27 10:04:30 2024 +0200 Misc updates post release [skip-ci] commit 97c8e46ac0e35540ab3cb17173a4e112630f5844 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 16:23:52 2024 +0200 [skip-ci] commit 7537d11fa9a7b5d0297ba12f5d5ca66e36152793 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 16:01:59 2024 +0200 [skip-ci] commit f2d654c1c2f7c67e457f30115bd880eeff49581b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 15:55:53 2024 +0200 Update argo_documentation.py commit 832dbbad099708699191e702b1253ba30ae28832 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 14:50:31 2024 +0200 Update whats-new.rst commit 2aed4b43c9ecc26832577d180b588fab7fad9cb4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 14:50:23 2024 +0200 Update fetchers.py commit f60b28d82afbb39e5e20401e21167caed3cda98c Merge: b8857dba e09eeb20 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 14:49:03 2024 +0200 Merge pull request #379 from euroargodev/releasev0.1.16 Prepare for v0.1.16 Flamingos Release 🦩 commit e09eeb20176703a9393bb811a359204b00182acc Merge: 17e2b52a b8857dba Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:34:41 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 17e2b52a9f642f6bc161bfb7daeed65986133669 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:31:29 2024 +0200 Pin xarray < 2024.3 commit b8857dbabfa0b4a96f111f75cb894e8068ed2944 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:30:05 2024 +0200 Pin xarray<2024.3 commit 97a20e7d4af1e0c6cacbd8158504c01b186873f6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:26:09 2024 +0200 pin xarray<2024.3 commit 3db25dbc9217e1bbf3f9ecee955d3bd0dd3fe042 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:24:07 2024 +0200 update test data commit 9137beb813587b5e9e3139d9ebcce99f6ee50954 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 13:51:48 2024 +0200 Clear test data commit 69cefb5cbcdde55432018e7b94bacaa843790e41 Merge: 7d1680be de0d54fd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 13:44:43 2024 +0200 Merge branch 'master' into bgc-2024 commit 8c75ef428715837a453bb9ed230e25346ab2c6cd Merge: d8a25d34 de0d54fd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 13:41:50 2024 +0200 Merge branch 'master' into releasev0.1.16 commit de0d54fd216e299b2b0438388d5710975cb0d4e2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 13:15:35 2024 +0200 Yet another update to test data 😭 commit f890a83470f2cb0503d3a17bc22aedae74e45c3d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 10:56:44 2024 +0200 Update BGC test data commit 06eed8c24aea3f6f55d8c77c25b99e9096a19297 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 10:56:18 2024 +0200 Update test_fetchers_data_erddap_bgc.py - improve debug message to better identify failing test commit 4ee991335a924d76bcc2af63995a088a788071e8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 10:55:17 2024 +0200 Update erddap_data.py - fix bug in N_POINTS properties that was not using the real list of fetched URIs commit 966a3ebb961dcff9283627b4fc3f2a73e71325e5 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 16:12:57 2024 +0200 Restore use of mocked server commit d8a25d34617560c72ec8bff151d069c1f67b1f05 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 16:12:27 2024 +0200 Restore use of mocked server commit 94e17e3442e7ac0f3e042a3070fc94e6e8784cfa Merge: a11d0ca0 59ba8ffb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 16:02:08 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 59ba8ffb8320a108821d15d1184b198bb8b0441c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 15:55:01 2024 +0200 Updtae test data commit 788fae68a9395642f3de34c4f49594f8cd4c5879 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 15:50:01 2024 +0200 Update citests_httpdata_manager commit 83840f8d32a5bfeb4ac595cb247bc9452c24d76b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 15:49:55 2024 +0200 Update test data commit 600b49d5773bd246d7fca0c73b698774687173b3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 15:04:38 2024 +0200 More test data update commit c1e801d274601040891579ad41c95b511bcc8dfe Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:37:20 2024 +0200 🥶 😱 - implement httpstore urls_registry property: new feature taken from bgc-2024 (not merged yet) but necessary to use the citests_httpdata_manager ! - bad practice ! due to my horrible tendency to put too much in a PR commit ac694fe336b56ea88fed38f84a2459e2555d661b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:26:31 2024 +0200 Update citests_httpdata_manager commit cfe06637182eed35396ca886d4c2067fe8d3f545 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:26:20 2024 +0200 Clean up again test data commit 8348e34ee464cdd06dd91b5c4fc80d4077eacd38 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:23:56 2024 +0200 Update citests_httpdata_manager commit e1b8af412e4d5105ce859197c3d5ae51b21c1dd4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:23:46 2024 +0200 Update test_xarray_accessor.py commit 7d1680be5565a9069f840d5184c164d3d6367898 Merge: b6c84863 78ce0f73 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:03:21 2024 +0200 Merge branch 'master' into bgc-2024 commit a11d0ca07ed972b3edcdfed2dcc8b54002510bfe Merge: 3011406a 78ce0f73 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:02:22 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 78ce0f7303f7f2d5117908b49e116e7b7cd49001 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:02:08 2024 +0200 Add missin altim test data commit 3011406a1ab7b21533a71e575892703f9dfd2373 Merge: e7b210d6 3810eac3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 11:37:23 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 3810eac33e0e10b3d4a7d89c38e2a5e8e0377c77 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 11:36:44 2024 +0200 Update test data commit b6c848638b1c0a5771a4ad5e4eb97f923c122d54 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 10:23:54 2024 +0200 Update test_data commit 27d4f5799fe4b190912d97b2dc95a23a03da26eb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 09:39:00 2024 +0200 Update mocked_http.py - mv from pikcle to json registry file commit 8ffddde549525639767c7e8eaff40845b76a3dd9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 09:35:20 2024 +0200 Update test data commit 058ba9b6b692afb968556ec2f8213cbf59820578 Merge: 284a5d21 1ab75e7b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 15:45:21 2024 +0200 Merge branch 'master' into bgc-2024 commit 284a5d2189d80cd1b7c7c3e00e94ca1e0715c549 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 15:41:01 2024 +0200 Clear test data commit 1ab75e7b3acd6fc7541bdab63d42d0d07ef3dbc0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 15:39:59 2024 +0200 fix for test data with new erddap commit 0578b05d9e3a72f4b1b6ce1bd20a1c2799df0fa6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 15:39:22 2024 +0200 clear test data commit 1516689f9f1483b83e61e628c53beff7ab55c65a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:57:33 2024 +0200 citests data manager commit e3c3ee24dac11be0c2821b7e4805b9ef9ffdb274 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:51:00 2024 +0200 Update test data commit cf1722f3f6721089583267eba85573de59c8261b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:23:54 2024 +0200 Create citests_httpdata_manager_altim.json commit e7b210d614d3ad45566f2b96cc68a8ffb2566ce8 Merge: 74b54a5e 70c37bf2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:13:29 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 70c37bf27ac73e08236aa2f4ff346ea4a46268b3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:10:34 2024 +0200 Update test data commit f7ac81ad522c9d1a7974854ed10e5185134c3487 Merge: 289a4aa8 76cb3261 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 09:27:44 2024 +0200 Merge pull request #344 from euroargodev/erddap-update Erddap update Merging anyway because fails tests are due to mocked server data to be solved and ok on master commit 76cb326175a43fb65012d338d9bcd783f2a34db0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 08:19:04 2024 +0200 Update whats-new.rst commit 9bb5ac0ae160c3670cfd12e5d5ff3b8b97d2e954 Merge: 765cd5dc 289a4aa8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 08:17:57 2024 +0200 Merge branch 'master' into erddap-update commit 74b54a5e7ff7738a1668cad02951f6e196be8370 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 08:15:56 2024 +0200 Update install.rst commit 98cd7b618b43df94de8fe83888e870f6cd85c13a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 08:00:11 2024 +0200 Misc commit 2554876505c69534e3e82bd1a42fd8532f9bd3f4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 07:59:26 2024 +0200 Upgrade py3.9 pinned versions commit c8593357c40e7abd9ec19247d0ca9d92db30cf74 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 07:33:14 2024 +0200 Update requirements.txt commit 808e3fee62dd1e5719f509e97c076af6974e64f9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 15:49:02 2024 +0200 Update requirements.txt commit cfe17db9328ee72f3f218ca06adbb7b6b0014425 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 15:48:57 2024 +0200 Remove py 3.8 env files commit 3c25411bd2e236f2335c8a5f14633689ef2b0e10 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 15:26:47 2024 +0200 Update readthedocs.yml commit b937fbd6c72874671baeb49e00ee99d1a35159f7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 14:16:27 2024 +0200 Update impact.rst commit c062ee06453e96b51335c6408093bda178ee4b32 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 14:16:24 2024 +0200 Update rtd env commit 90e66251c6b43963140dca790e5b671e868df52b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 11:00:11 2024 +0200 xarray < 2024.3 in pinned env commit 36708d5c47fc5743d8eccaa5612f65e00d7347c9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:56:51 2024 +0200 xarray < 2024.3 while https://github.com/pydata/xarray/issues/8909 is not solved commit 860f3ec0345c8dca4b4e63d2679924c50bc072f7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:41:34 2024 +0200 Update casting.py - delete deprecated `cast_types` commit 844b4150b9e2b6b212b3afda1b62dd47a9c79ce0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:41:10 2024 +0200 fix 3.10 env commit f4fb3833c61f3e61260d5c16545471be6981f2bb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:28:34 2024 +0200 More 3.10 CI tests support commit a3df8851374e686718af58f1fbfca1f367bc98d3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:27:18 2024 +0200 Improve show_versions following support for py 3.10 commit 7a98bc132e5015230e39303adef54e54b5aa9ae9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 16:48:35 2024 +0200 Add support for python 3.10, drop 3.8 commit c1fc7c01058457e9050e40ec360024036ed040d5 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:51:12 2024 +0200 Delete utilities.py commit 755de3c908a56a7c8dc1ea8407b3e733859d566c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:50:59 2024 +0200 black + flake8 commit e52a9ea47d0c7442df03c7ab0a5c575e8f4f3f49 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:24:48 2024 +0200 Codespell commit 0c227bf22754fb480b23765273658df091a8efb0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:24:41 2024 +0200 Update setup.py commit baa3033e5997582bd84bace65b02bbae2757cfbd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:17:19 2024 +0200 Update whats-new.rst commit 765cd5dc1e9504d21827169ada293748b91e8eec Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:03:33 2024 +0200 Update test data for erddap commit 64c3582a54c48a62d066c81e61abeed2af66cff3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:03:09 2024 +0200 Update test_fetchers_data_erddap_bgc.py - removed unneeded test commit 289a4aa8391cb4cf08a605bbe4dc23a945e9081b Merge: 8102bfef 39daa57b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:59:43 2024 +0200 Merge pull request #378 from euroargodev/377-content-response-from-nerc-vocabulary-server-seems-change-that-makes-argonvsreferencetables-fail Update ArgoNVSReferenceTables to handle new NVS server output format commit b461ed202a9013696be1b0b0d2e564bc4641d696 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:25:32 2024 +0200 Update test_fetchers_data_erddap.py commit 39daa57beb81ad3867063ec22d3c324dc47cf89c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:06:14 2024 +0200 Update test data for new NVS server responses commit e49498ef90156ab0a1f3dcfb7ec96d26fc4827df Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:05:36 2024 +0200 Update test_related.py - fix for new server keys commit 6996dc3d646b510c067118dc999b8c0ddd369ea1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:05:13 2024 +0200 Update reference_tables.py - fix to use new keys commit 3cb02e02de370b7df43f6e533d6ae6ed30c0f743 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 11:29:16 2024 +0200 Update whats-new.rst commit de218b10477ae0d9d3569184610e2c155d8edffe Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 15:33:07 2024 +0200 Update test data commit 20ea26b4ef20796d8c5f30f357a15210c036d75e Merge: 6853f05f 8102bfef Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 15:27:06 2024 +0200 Merge branch 'master' into bgc-2024 commit 6853f05f273b613763ab4016acb34cf477cd6146 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 15:20:21 2024 +0200 Add CLI folder to git commit 17c8fb7ed9e7543338d5553eddc33c7c9ac9de7e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 15:15:54 2024 +0200 Update erddap_data.py - fix bug mal-formatting url for ref dataset commit c9eb9a34d1ab546a151f1ef9c7719af1db1a464d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 14:19:18 2024 +0200 Update xarray.py - fix bug in filter_researchmode commit b6af5f61704a7a5cc34a5dc171c6beb152fa69c0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 13:50:49 2024 +0200 Update mocked_http.py move from pickle to json db file in tests data commit d9746e5de6286cf39b484828d1ca366e17fd3553 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 13:50:15 2024 +0200 Update erddap_data.py - removed BGC measurements constraints on the erddap request because it is too unstable - latitude and longitude must not be NaN - pres/temp/psal adjusted not nan in research mode in the erddap request - fix bug in N_POINTS properties that was not using the effective URI to be fetched commit 4ad0e784910c08eb14b6760789dbca805aaade85 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 10:40:13 2024 +0200 Update erddap_data.py - fix bug where by in research mode URL was still using pres instead of pres_adjusted commit ca18b0d0d6940addfe3e679148ec7e58857a218b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 10:39:25 2024 +0200 Re-activate mock server with erddap tests commit dc3ab40d408d00105b0c6ef0a3006f015a46d564 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 10:38:47 2024 +0200 Improve coverage commit 044602adb32357ef47e101a8b9526eb0bbc6a8b3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 10:38:32 2024 +0200 Update tutorial.py commit 1aa3ed452d646025c56ef9e1fc3927c03bdf459b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 18 14:13:49 2024 +0200 Update proto.py fix bug in data fetcher proto sha not unique for different user modes commit 02264fdc24c9b650edce3bf3c6db9619370d14b1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 18 14:13:12 2024 +0200 Update xarray.py commit 654b53a1f7241cfada94f1640f8578364c0466a8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 17 09:33:08 2024 +0200 Use real erddap server in CI tests commit 8102bfef6268ddfe6bec72296deae33d7bd21234 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 16 11:46:17 2024 +0200 Remove US GODAE ftp references Closes #320 commit 6f761426aa3d874dcf28c4cfb70f09fdf69ea480 Merge: d2bb38ba feecd02b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 16 11:29:34 2024 +0200 Merge branch 'master' into erddap-update commit feecd02be81ee39e55f5aa32cfaf9db5e481d1cd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 17:22:01 2024 +0200 Update whats-new.rst commit 814ae7fa7fa6a739189970459af307b3bbc0997f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 16:17:12 2024 +0200 Update filesystems.py commit 3655bc80064ec8e0dc4fecd8f9b5a951158c8654 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 16:17:09 2024 +0200 update test data commit 8c38f1357d792ab9df2ebe878fd4e5e421603d5c Merge: 16762975 470a3d9f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 15:15:05 2024 +0200 Merge branch 'master' into bgc-2024 commit d2bb38ba128f05841b4f333ec3db92c4384805af Merge: e76d2e58 470a3d9f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 14:24:30 2024 +0200 Merge branch 'master' into erddap-update commit 470a3d9f9cfa297d249364929499ca0ff8d86618 Merge: 542fd241 70c01269 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 14:21:28 2024 +0200 Merge pull request #326 from euroargodev/gdac-amazons3 S3 support commit 70c0126990972afb864342e42ad7e390f39fe4ae Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 12:58:20 2024 +0200 Upper bound on xarray < 2024.3 Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex' commit ed29bd0e9d20e6cebdd1e524a4ba0b48ff609789 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 11:25:44 2024 +0200 Upper bound on xarray < 2024.4 Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex' commit a89b8c90e5ca28a74390381d746e43b661a27ccb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 10:34:12 2024 +0200 upper bound on xarray < 2024.5 Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex' commit e76d2e5819f239eeb30a2249a84e72b15c2d0286 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 10:32:22 2024 +0200 Update erddap_refdata.py commit 8ca8cd160016b503901e329464534241e768837a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 10:00:53 2024 +0200 Upper bound on xarray AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex' https://github.com/pydata/xarray/issues/8909 commit 6b8b3a816554d2bca7ffe33040caff12e2502ca4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 15:56:52 2024 +0200 Update xarray.py fix upstream numpy.exceptions.DTypePromotionError commit 4f27289f89d609e287affb7aa08c5df0fb5f20da Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 15:56:41 2024 +0200 Update gdacftp_data.py commit ef055ee76be77180b6f6a6c0b110d627d29e8f65 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 15:56:39 2024 +0200 Update __init__.py commit 8af82c7ed47b67f744b36fef2adb17f3fe0fd97e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 15:10:40 2024 +0200 Update gdacftp_data.py commit 8c0b32d04d40a95be90a6f985bfc10d1d6496e67 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:27:13 2024 +0200 Update test_stores_index.py commit c18b2ad0140b238162df637102b5dc071f43e04e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:26:57 2024 +0200 Update test_stores_index.py commit 6901a9c64351ff6dde76cbe396ded7427661e9bb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:26:29 2024 +0200 Update test_stores_index.py commit d49a3291e14d82090a33a48839ece9dc26d65070 Merge: 50760d16 d702ada5 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:24:51 2024 +0200 Merge branch 'erddap-update' of https://github.com/euroargodev/argopy into erddap-update commit 50760d16a4c88dce3b2f0f446316dec0e9c510cd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:24:48 2024 +0200 Update erddap_data.py commit d702ada5488b86a8b9a06fcac5a7163ba012582e Merge: 98429124 542fd241 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:55:26 2024 +0200 Merge branch 'master' into erddap-update commit 9842912453062284242aebf3d86a08371d050e64 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:52:11 2024 +0200 drop support for erddapy < 0.8 commit e677992b602f3db3500929f6dd9cf5a75de90425 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:43:48 2024 +0200 Update filesystems.py commit 59912390357de72decc54f100c3298403735530a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:38:17 2024 +0200 Update argo_index_proto_s3.py commit fbdbb1f1073f1dcd2e5bbd13bdf04169f9ebfbfa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:35:58 2024 +0200 misc [skip-ci] commit 50560f7da051182b814cd68cc204aba18c5899c5 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 15:53:14 2024 +0200 [skip-ci] commit 0443ae441605609a595318e6f98d242ebb0a5869 Merge: 77260939 542fd241 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 14:54:03 2024 +0200 Merge branch 'master' into gdac-amazons3 commit 542fd241c99b3a11e2448c7bf5b4da99c11f7edd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 14:49:07 2024 +0200 Update workflows to access s3 creds commit 77260939b34efcba1c391994e86207c8897b3493 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 14:46:24 2024 +0200 update workflow to access s3 commit 26e06e99a9bf160588a16e9fbe925e72f31081e7 Merge: a357439e 0c8d7e42 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 11:20:57 2024 +0200 Merge pull request #371 from bkatiemills/argovisV2 basic integration of argovis API 2.x commit 0c8d7e42f7f54f2a975c56a4ae88ff428ce6fb55 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:50:01 2024 +0200 Update whats-new.rst commit 604af4e3eefa53a38e75eb8cf4d1cf1a4c8dc582 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:47:15 2024 +0200 Update argovis_data.py commit a2e47a2370e7333cf9afdd2d880e6b513411a24c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:37:31 2024 +0200 Update argovis_data.py commit 86c042e95fea5f504c4d64fd2ee8340df0d83963 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:37:22 2024 +0200 Update options.py points to argovis key generator commit f51d4485a5541c42362ac78b057d6e2494d8dbfd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:28:53 2024 +0200 Update filesystems.py - fix bug in merging user arguments for the http file store instance commit f49aaed3a764216ac09886832776a1854d8890cb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:07:06 2024 +0200 Update options.py Add missing checker for new `argovis_api_key` option commit 3747d251ee1054fea217f5cac11fe2ceb307fa5b Merge: 9b053b67 6037f6ad Author: bkatiemills <you@example.com> Date: Tue Jul 9 14:42:44 2024 -0400 Merge branch 'argovisV2' of https://github.com/bkatiemills/argopy into argovisV2 commit 9b053b67033578fe16e3a394b595b922ad79f31a Author: bkatiemills <you@example.com> Date: Tue Jul 9 14:38:46 2024 -0400 argovis API key injection commit b88de82a631b17a501b4919c674c3042aeb50f4a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 18:26:59 2024 +0200 misc - local tests ok commit 6037f6ad8c3bc759bcd8eb8957bd148051a7f882 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 16:41:31 2024 +0200 Update whats-new.rst commit 3d2aecfe4d285d1a9a8386505cc13fcfea7e65d3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 16:33:34 2024 +0200 Removed obsolete filter_domain because https://github.com/euroargodev/argopy/issues/48 is closed commit 16762975b657b56f1c5c650e5e8bd6941cda4ec3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 12:06:06 2024 +0200 Add URL registry for erddap fetcher - force the indexfs to use the httpstore from the fetcher - add a registry in the httpstore commit c79cb360d7d87b2719a326e7f6517aed1d0dff7a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 11:27:49 2024 +0200 Update erddap_data.py - add checker on BGC parameters provided in params and measured, raises a ValueError if parameters is not found commit 29ddf8723021bba621c809aa117f264842a08698 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 11:01:07 2024 +0200 misc - refactor _bgc_vlist_requested to _bgc_vlist_params for consistancy - improve docstrings - turn off mocked server for erddap tests commit c4e8c9c36406e4d9d145e39a1be5e50a295213bc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:48:03 2024 +0200 fix CI tests commit 84aeef29a4b4d4491309405bd3bb022c59aacabe Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:30:25 2024 +0200 removed unused raiseNoDataLeft commit f5df4e7bd1abceaabe669af54fdec5feeab55067 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:21:35 2024 +0200 Apply Black on xarray commit e959d7fd7bdc9f6f7b07c122dfbb8c8e8c8da662 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:12:35 2024 +0200 Better docstrings commit 3c4b355a2e6d0ce31f1379cb43ffbb14dcf8efac Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:12:10 2024 +0200 Update fetchers to use correct filter_data_mode commit 361f12cb1abd5b8c076e445ace275e77f761ea2d Merge: 83b95018 a357439e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 16:42:42 2024 +0200 Merge branch 'master' into bgc-2024 commit 83b9501849254f826830fcb760ae5170185b2689 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 16:41:35 2024 +0200 Add deprecation policy for filter_data_mode - mark 'filter_data_mode' as deprecated while preserving legacy behavior - new, correct 'filter_data_mode' is temporarily at 'filter_data_mode' commit a357439e44f411bd04303ab810a9ad246fd51f60 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 16:31:05 2024 +0200 Upgrade deprecated decorator - allows to be ignored from some caller - introduce version argument commit ffa3ff243354a0fad98cba9c830d8b1f2046b6e5 Author: bkatiemills <you@example.com> Date: Fri Jul 5 14:11:37 2024 -0400 box region queries commit 9aa1ba36e2278cdb001c316c227328daf7389c0a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 5 15:26:57 2024 +0200 Fix missing lists from utils commit 9a7c4188cffaedc2601018f84e21bb4a40a9a232 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 5 15:11:37 2024 +0200 catching up - allow for ds='bgc-s' in place of ds='bgc' - new decorator raiseNoDataLeft - better docstrings - fix llcache/lscache cli - DataNotFound and NoDataLeft inherits from NoData - some internal refactoring in facade commit 41174a7db49dc48c3207dbf84c1aa08decb9eaef Author: bkatiemills <you@example.com> Date: Thu Jul 4 15:56:42 2024 -0400 provide correct liveness probe endpoint to api_server_check commit f476f3ebe608dde67a3b88d4c285c378f0f73856 Author: bkatiemills <you@example.com> Date: Tue Jul 2 12:40:38 2024 -0400 basic integration of argovis API 2.x commit 0372f38fa8285b98dd4a7bfd908ce88d9e6fa7f4 Merge: d370d33c d5148290 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 2 10:10:11 2024 +0200 Merge pull request #370 from euroargodev/dependabot/pip/ipython-lte-8.26.0 pip prod(deps): update ipython requirement from <=8.25.0 to <=8.26.0 commit d370d33c2a1ca5a86992e214e642af1c4f0e46ac Merge: fb3f9117 8978d83d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 1 09:31:24 2024 +0200 Merge pull request #367 from green-coding-solutions/eco-ci-v4 Eco-CI v4.0-rc3 commit d51482906f073deb9412f4a2d03440cdaa8dc74f Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon Jul 1 04:28:30 2024 +0000 pip prod(deps): update ipython requirement from <=8.25.0 to <=8.26.0 Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/5.0.0...8.26.0) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> commit 8978d83d18e073c6fced620f4beb7205a4d742c0 Author: Arne Tarara <arne@datafuse.de> Date: Sat Jun 29 21:53:30 2024 +0200 Removed pr-comment and PR write permissions commit fb3f9117545c27b30702444806a93e3bfaff454c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 21 14:39:48 2024 +0200 New impact section in the doc commit bfe9e91ecae3846736c8b0b8e7ae335110c6aa70 Author: Arne Tarara <arne@datafuse.de> Date: Tue Jun 18 15:14:21 2024 +0200 UPSTREAM added in other workflow commit 9df2cb0f64816b7a11911b0e71009966dc22000d Author: Arne Tarara <arne@datafuse.de> Date: Tue Jun 18 15:12:18 2024 +0200 Moved to v4.0-rc3; Adding PR-Comments; removed supeflous UUID mentions; Added machine-uuid commit 49f5ea2f01fd7d1c2b94d773b6df611cb712ad8b Merge: 233ed147 b3daa650 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 18 10:44:18 2024 +0200 Merge pull request #366 from euroargodev/dependabot/github_actions/codecov/codecov-action-4.5.0 Bump codecov/codecov-action from 4.4.1 to 4.5.0 commit b3daa6506fed9829293baa8de5fda02e31b51c8a Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon Jun 17 04:34:22 2024 +0000 Bump codecov/codecov-action from 4.4.1 to 4.5.0 Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.4.1 to 4.5.0. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/v4.4.1...v4.5.0) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> commit a23e93f71d176f50308a50feb9875bde86b98785 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 18:48:13 2024 +0200 Update argo_index_proto_s3.py commit 38d4a785244d75a681a3aba318ed4a4e679f31ab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 18:05:18 2024 +0200 Update argo_index_proto_s3.py commit b43fbebbb79cf3ca961c09ec2abc7496e9209d70 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 15:32:48 2024 +0200 Update argo_index_proto_s3.py commit 68e362b06081e00d92e71eb68d4cd85a1f0e16e4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 15:30:07 2024 +0200 Update argo_index_proto_s3.py more log info for CI tests debug commit 233ed147e39cbb5805e7fc73108f90c09abf962b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 10:58:03 2024 +0200 Fix bug in the facade commit 9055e71e89758c770a3aeed641102b4121e8dcb7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 10:55:50 2024 +0200 Fix bug in the facade commit a7cff79f0671b636cb220dbbaba519ec0bd7386a Merge: f6269e9f 9de84079 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 09:58:38 2024 +0200 Merge branch 'master' into gdac-amazons3 commit f6269e9fd361406177d26dbf73518cd97b76201a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 09:41:27 2024 +0200 Update argo_index_proto_s3.py commit c8d546d97d4b444e2547680264baa759d923157c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 17:45:14 2024 +0200 Add new bgc-s and ngc-b dataset This shall allows to make the difference between the synthetic and the other BGC files commit 148beb06e1308d7b7d111abd90e15e78f83a2795 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 16:22:29 2024 +0200 New split_data_mode transform so that we can handle PARAMETER_DATA_MODE commit 1ea391e617d9db38276d529c786985b27b02a196 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 16:21:52 2024 +0200 Update canyon_med.py commit 2dde63be5cee80a5f66b70a7e40345ec51344193 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 16:21:36 2024 +0200 Update gdacftp_data.py Preserve original netcdf file attrs commit a7231f36588ad5b0cf18d36adde2c808368e76d7 Merge: 9bc14033 8d59c03e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 09:39:15 2024 +0200 Merge branch 'bgc-2024-canyon' into bgc-2024 commit 9bc14033e504181f779cdc00fb5aa77d3c6974ae Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 17:08:21 2024 +0200 Fix docstrings commit 8d59c03ea211dbe2d0a1e921ecec3c8e6460f3f1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:55:33 2024 +0200 Update canyon_med.py commit d5bc78c6f0c30cc2f36a8dc539c90cc433706463 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:45:24 2024 +0200 Add mask to ensure that input measurements are in the Mediterranean Sea commit 2fa392e645143d3e679b37f6a5049b85475a9ab7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:18:49 2024 +0200 Update extensions sub-module - Create proto class for inheritance commit 79b98a7a7008af59a8a5ba62eb1ae1fa1bc49120 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:00:24 2024 +0200 Update documentation commit 6a4633d55670ab1f114147622574c5710f95a527 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:00:01 2024 +0200 New 'extensions' submodule - In this sub-module, we shall find all methods/classes that will be used an "extension" to the xarray Argo accessor - The goal is to facilitate the dev of more extensions for new comers - Refactor Canyon-MED in the new 'extensions' submodule commit cc7a86994855924d7c0d430e42b5cec26382d705 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 10:17:24 2024 +0200 Bring CanyonMED to argopy ! commit d3a90602d1fc4d5f135c18a7e2ac2779fa9d0652 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 10:17:10 2024 +0200 misc commit ce11e5008fb31cde981f5e3052ab2035f588b1ab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 10:16:41 2024 +0200 New register_argodataset_accessor This would be a simple mechanism to provide extensions to the argo xarray accessor commit e6ade192f48095788c1e46b91e55e119a5d8ff07 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 19:46:38 2024 +0200 CANYON-MED NN weights commit afbe4d9cc615cb9284bdddeadffd181fb1f8f4ab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 19:45:03 2024 +0200 kick start commit f552cb98ac77a0989db2983396580fbe5aa538a7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 19:38:52 2024 +0200 Add support BGC HDF5 netcdf file commit bac1387b226de5ee7c9b36ee72e3b4a8c87bcd27 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 17:47:58 2024 +0200 fix bugs here and there commit 1657ed02d4acc7fb9d2a21db4e8e41d7fed73095 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:29:19 2024 +0200 Improve filters commit a569adc58f1f492039459f10d656909507045180 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:29:06 2024 +0200 more BGC var/param listing - list_bgc_s_variables, list_bgc_s_parameters - list_radiometry_variables, list_radiometry_parameters - list_core_parameters commit f047945e19c3617e9f603b025dc7dabb519d5e8e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:27:01 2024 +0200 Update fetchers.py - add postprocessors for BGC commit cf38c5b6a11deaf80f05cd3fd716fcb93dd6d7b0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:26:30 2024 +0200 Update proto.py Update filter_variables to support BGC commit 63d12722569b99b933bd367c8e75b86bfd9c272b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:26:00 2024 +0200 Add user_mode properties to low-level fetchers commit 7e0bb4d3dfe0ee3f9e0f0bf8f53728151ded343f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 18:58:46 2024 +0200 New filter_data_mode, not backward compatible - Add filter_data_mode that really filter the data according to their DATA MODE (previous version was actually merging PARAM and PARAM_ADJUSTED, this is now done by transform_data_mode commit 5a96ff6e8470710512b6ff720a74bd05480b309c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 18:53:32 2024 +0200 Cleaner postprocessor definition in the facade commit da89110c7c90fba5516f03952d2ea83194e5eff2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 09:26:19 2024 +0200 Update erddap_data.py - fix list of bgc variables to request and their constraints - reduced final checks in to_xarray for bgc to filter_measured - delete filter_points, new filter_measured - filter_measured applies to <PARAM> OR <PARAM>_ADJUSTED commit 930fc6413ae95f0dfd6b6411e1d4e89b90aaa63f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 09:06:44 2024 +0200 docstring commit fe59468fce557f1c70c919d661bb2289b5082e35 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 09:06:31 2024 +0200 Update fetchers.py - fix bug in to_index data fetcher method whereby the index could differ from the dataset commit e22be870214102684494230aa9335e66c201c76b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 16:05:15 2024 +0200 Update test data commit 2265e6205c238e4cfa067367068a36fc61369f89 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 15:26:05 2024 +0200 breaking change: renamed argo.filter_data_mode into argo.transform_data_mode commit 5592efcb59a41cb5ef68de382f6689df49e1bad1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 14:51:43 2024 +0200 New xarray.argo.transform_data_mode - based on new utility merge_param_with_param_adjusted commit 861ff3148cdedf894c2270059f8a2471a982668e Merge: 6696a73d 9de84079 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 10:34:34 2024 +0200 Merge branch 'master' into bgc-2024 commit 9de84079c2a7aa99f7883690519b3cd3d53461a2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 10:34:20 2024 +0200 [skip-ci] commit be454e15ea08cd9deacb248391040a08b8db2301 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 10:29:42 2024 +0200 Update doi_snapshot.py commit 4bc51bdc61bf1f3a031df9d26fd7f3ce0293b96f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 10:16:29 2024 +0200 Add ArgoDOI to argopy API documentation commit 6696a73dc3623e15435e4168b87695184297adb2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 6 16:33:27 2024 +0200 Update xarray.py - don't remember why these variables were included, not consistant ... commit a9561e4f158dc18c967e20f04756d1874768ac64 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 6 16:33:04 2024 +0200 Update erddap_data.py - start support for more user mode in BGC commit b378da1d05e660e6ef618316352868007b59bc26 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 6 16:31:31 2024 +0200 Add support for the "aux" index file + bug fix - fix bug with shortcuts in ArgoIndex file and convention - the ArgoIndex now support the "etc/argo-index/argo_aux-profile_index.txt" index file commit b9800a69087b223e8d3f9df92b113a1b30d87091 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 5 09:47:16 2024 +0200 Update erddap_data.py commit 229de718d415a7c4f378c395bc179461ed6798e1 Author: Guillaume Maze <gmaze@ifremer.fr> Date:…
commit 62ba4cb9aae0cd2ef71b13e4b585a9d0d19da53c Merge: 919484e8 ce6fed99 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 13:50:16 2024 +0200 Merge pull request #389 from euroargodev/other-major-breaking-refactoring Implement other than bgc-2024 branch major breaking refactoring for major release v1.0.0 commit ce6fed9992d1692b0a4e698623a1ee469b75f386 Merge: fa05fa78 919484e8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 12:08:02 2024 +0200 Merge branch 'master' into other-major-breaking-refactoring commit fa05fa78446069cf2c483f036cafc5eecf4f9066 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 12:07:02 2024 +0200 Delete test_deprecated.py commit 919484e86ef57c8ed3a8009a1b9d6ed8e1104684 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:37:21 2024 +0200 Fix ci tests env fix error libmamba Could not solve for environment specs The following packages are incompatible ├─ fsspec 2024.9.0* is requested and can be installed; └─ s3fs 2024.6.1* is not installable because it requires └─ fsspec 2024.6.1 , which conflicts with any installable versions previously reported. critical libmamba Could not solve for environment specs commit 0dc9834dbfe770eed7467908fa9bad18d0559ab6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:31:21 2024 +0200 Add upstream tests with python 3.11 and 3.12 commit a1aedc5be403a91374a5bc724419ed744de77728 Merge: 747ba134 549d8c31 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:25:09 2024 +0200 Merge branch 'master' into other-major-breaking-refactoring commit 549d8c3167b69259819e0bcc2cee92afe133f236 Merge: 1e79ec08 2d4785d7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 11:20:42 2024 +0200 Merge pull request #356 from euroargodev/bgc-2024 Work on BGC from 2024 LOV visit commit 2d4785d79cc5feead2d75271953e501cb79eb43e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 10:30:17 2024 +0200 Remove 45mins timeout for CI tests commit 17970376b346a1ab2ce0144a5cdd1193079d96a9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 08:03:22 2024 +0200 Update CI tests data include standard and research mode for erddap BGC commit 82c20c879868efebb60e2239347ac4a40f877fdb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 07:44:50 2024 +0200 Update CI tests data commit f7ebc219517e1dba28df6ecb1ba3ddfbdaa6616a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 25 07:39:34 2024 +0200 Update test_deprecated.py commit 51355c3bdf4d946618c437fa8446898241bbf137 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 12:08:05 2024 +0200 update CI tests data commit 809adc988bbb219000d0353103a1e6fd9703e4f0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 10:37:20 2024 +0200 Update create_json_assets commit 2ff193f1e8ef464027482ea8b7ca83666897be39 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 10:37:15 2024 +0200 Update argovis_data.py make sure argovis is only using a single filestore commit a73f72725fa2709691f669790dc092c3434f227e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 24 10:36:53 2024 +0200 Update CI tests data commit cf41ba4146eeb34b778f6f66cb59a7d890e65f00 Merge: 4681d558 1e79ec08 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:59:03 2024 +0200 Merge branch 'master' into bgc-2024 commit 4681d5587d7a2d697ae1c0bbf21d991c85938418 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:57:32 2024 +0200 Clear CI tests for easier merge with master [skip-ci] commit 1e79ec087d5e836e3d25eec644ba75665c6bd0f1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:56:59 2024 +0200 Clear CI tests data for easier merge [skip-ci] commit c9de8b949482e82d6753f3eb70554b95d15dbc4b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 14:54:43 2024 +0200 Clear CI tests data before merge commit a21a644eb449bb8a400751927603034a58d35972 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 23 09:56:26 2024 +0200 Update whats-new.rst commit fe8b91cd12992743a6765ea57f373398d72f3efd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 15:38:26 2024 +0200 Update requirements.txt commit 4ae5aab1f2e29403f59ab944ee3270f0dabf1086 Merge: 0f5a7542 b135bfaa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 15:36:58 2024 +0200 Merge pull request #394 from euroargodev/releasev0.1.17 Prepare for v0.1.17 Bat Release 🦇 commit b135bfaae15fb97ce9eaa9204f57e187a0cd0a6f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 14:16:32 2024 +0200 Update dev env definitions commit 0f5a7542d72fd8af815403630f5d7ef57c6f73dd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:54:21 2024 +0200 Update HOW_TO_RELEASE.md [skip-ci] commit 4bc625ef49b781874328dd40d75e897f31215160 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:49:08 2024 +0200 Flake8 commit 34d1a46d2bac79d52678450709d077bfd6733e0d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:45:15 2024 +0200 codespell commit 62590119e30b4dd477c27865ea437ff5125630aa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:42:32 2024 +0200 Fix CI tests data update commit c5ab62276f4859bdb1ad4ad528e0e40ca8b32df4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:36:15 2024 +0200 Update cheatsheet.rst commit cb66217945ba3d698e4db600eefe6d3f1a712b71 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 13:28:25 2024 +0200 Update cheatsheet PDF commit 10ff2cfece19fe156a87f12bf01a62177b796780 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:50:15 2024 +0200 Update CI tests data commit ec0b14cca73cd53ce7761411b0d8a32c889af3ce Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:48:41 2024 +0200 Update HOW_TO_RELEASE.md [skip-ci] commit e2df7895b90f39b7202ab544f4f87911fed46b8a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:28:55 2024 +0200 Update static assets commit cffefc01ab57a8f94ba3c7e6482b95e7ee008369 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:28:24 2024 +0200 Update reference_tables.py commit 6cf264492f7c61f43e750e401fd024b695d4d900 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:07:15 2024 +0200 Update whats-new.rst commit eb7e689fcd6e1fde88ebbe4059f845cfa902ab45 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 11:07:12 2024 +0200 Update fetchers.py commit d8121d8802d2f58c4397d00a649ff5f5299bcc6e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 10:58:12 2024 +0200 Update HOW_TO_RELEASE.md [skip-ci] commit 88ff363c91fd5d4e7c3fe5549f9028def1860bf7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 10:34:20 2024 +0200 Move to v0.1.17, to Beta commit e48ab550d339a48e40858485ef9f876514e7f58a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 09:47:51 2024 +0200 Update xarray.py don't anticipate too much on the upcoming filter_data_mode replacement commit 29a5cfcd5be63f230876abd0abb27c8e071c61e2 Merge: 5a310570 f3b0a56c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 09:45:45 2024 +0200 Merge pull request #388 from euroargodev/deprec-before-major Introduces deprecation warnings before major v1.0.0 release commit f3b0a56c5099995173cfa605969427c2f5bc0aac Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 20 08:56:53 2024 +0200 Better deprecation introduction commit 5a3105708f6c1494e3e99ca88651487d7cac3302 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 19 14:15:02 2024 +0200 Pin erddapy for python < 3.10 See https://github.com/ioos/erddapy/issues/359 commit 747ba134d797683bafa275da73c8e97c9fa22707 Merge: 37f24952 0095fe60 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 18 15:33:08 2024 +0200 Merge branch 'master' into other-major-breaking-refactoring commit 37f24952dec4c23d12ced7b50331b1a9caa28e7b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 18 15:32:46 2024 +0200 Update monitored_threadpool.py commit 6d9be491158f2da8335031891ebf2e85402f452b Merge: 62ece427 0095fe60 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 18 15:30:38 2024 +0200 Merge branch 'master' into bgc-2024 commit 0095fe606796185e48479c48d3ea36a94bb0d685 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 17 11:03:34 2024 +0200 Allows for low level http fetching errors to be ignored - usefull for a Dask client as a parallel option commit 26693016c881754995f4b848feaae691f1643a4b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:46:38 2024 +0200 [skip-ci] commit 87a996d351e32a377f28cc4b8cd5b6284fd3fb15 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:34:15 2024 +0200 Update options.py improve doctrings commit e87afe1cc0e453a757f920961c26c1572824d466 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:32:06 2024 +0200 Create test_deprecated.py Ensure we're having warnings for deprecations commit c319d0ae3af5eb18a9a4fecebe884430ba102036 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:31:32 2024 +0200 Update xarray.py fix deprecation warning commit 19daad3bb8554b31554c0824ef93e01810f11f3f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:31:13 2024 +0200 New deprecation for option 'ftp' replaced by 'gdac' commit c8906029601cbf5ae35da9ec52e50977462fcad2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 13 14:30:32 2024 +0200 introduce new "OptionDeprecatedWarning" commit c6bb528b1c037cb01f7a2c446e594edfec23d734 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 12 16:15:21 2024 +0200 Update static assets commit aa61927728d4f2846f9f256bfddb29c262d590c1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 12 10:22:47 2024 +0200 Update argovis_data.py removing numpy datetime64 utc warning commit a62dc9d0f8bf1e8a9889ad85b219c64133df9cbc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 12 10:22:32 2024 +0200 Update test_xarray_accessor.py commit 46a658615931c226af58443fc491b8483fe629cb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 12 10:22:25 2024 +0200 more ftp to gdac fixing commit a7557049d8428ab32e214bea7ff1f5a96eac6a63 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 11 14:20:02 2024 +0200 Update test_fetchers_facade_data.py commit 86f2edd18c8a93e0438b3d62ecd75c75bb096ad6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 11 11:20:06 2024 +0200 More 'ftp' to 'gdac' refactoring commit 91310fcd1a4315621902a483caee494fd2ebff5f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 16:37:48 2024 +0200 Update checkers.py commit 1b1c35cb9ac39e422810836c6d6e9d49688b06c2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 16:32:20 2024 +0200 Refactor "FtpPathError" into "GdacPathError" commit 623aec8a7727fe95e2de90f950910230e8abb504 Merge: 691c4876 62ece427 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 13:09:23 2024 +0200 Merge branch 'bgc-2024' into other-major-breaking-refactoring commit 691c48762533b0bb4dd860c7c255a2510714b0c9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 13:08:01 2024 +0200 More 'ftp' to 'gdac' refactoring in documentation commit ea0dc614e4f9a8e53040157c4856dac8661490cb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 13:00:54 2024 +0200 More 'ftp' to 'gdac' refactoring commit 07bc71df654b0b0e3ee6f6c4c1c214ee04a55747 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:48:30 2024 +0200 Refactor "ftp" vocab to "gdac" - option "ftp" renamed "gdac" - "FTPArgoDataFetcher" renamed "GDACArgoDataFetcher" - GDAC fetchers argument "ftp" renamed "gdac" - "validate_ftp" renamed "validate_gdac" in options.py commit e2c25fc5449e7bf847272e3b0f2c561fa7e0b101 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:45:17 2024 +0200 upgrade pinned s3fs commit c379d550646df56c80df092e9c569b6b09f3abf0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:26:35 2024 +0200 Refactor "gdacftp_*" modules into "gdac_*" commit 62ece427f01a73bb98d0eeb7dd92f71567f33376 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:23:23 2024 +0200 misc commit 7d103b1c045d08b55257ac79db9f93e7ba74ea6d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:13:48 2024 +0200 Update pytest.ini commit 3875306c19b64645dae4369131717ce67c600786 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 12:13:18 2024 +0200 s3fs > 2023.12.12 /home/runner/micromamba/envs/argopy-tests/lib/python3.10/site-packages/fsspec/registry.py:279: UserWarning: Your installed version of s3fs is very old and known to cause severe performance issues, see also https://github.com/dask/dask/issues/10276 commit c812f0c4e2767bb5fc4cc8bef73a3f80413589a4 Merge: 942022db 56690321 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:58:30 2024 +0200 Merge branch 'bgc-2024' into other-major-breaking-refactoring commit 56690321c1037f1e2dbb8bf3051f5c52c2d06f18 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:57:19 2024 +0200 update doc [skip-ci] commit d40b7690215791c14adce02780975e424d5e40cb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:34:38 2024 +0200 Update test data commit dc448c8f1874afc99dc2bc63bb1718a63ff4982c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:34:26 2024 +0200 improve logs commit 245e4b0df08b1ed317058137f09cad82b5dfbdd8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:33:57 2024 +0200 Update xarray.py - fix bugs whereby list of parameters was not created when the list of params was in the args commit 4faa1aa72de6e4e7d0a02efc54ace0f1c80d830b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 11:33:23 2024 +0200 Update format.py - fix bug whereby pressure constraint was on pres_adjusted rather than pres for researcu user mode erddap uri commit 2eec9a6423ee13daba86766cc12f24cdcf3cbcfc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 10:06:38 2024 +0200 Update User mode documentation page - describe BGC support for expert and research user modes commit e72cb63d293d69277e74d8f1899388287fbccfb1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 10:05:05 2024 +0200 fix bugs in variable and parameter lists usage and definition - list_standard_variables now return list for phy or bgc dataset - improve consistency of the "variable" vs "parameter" terms usage - fix bug whereby transforming the dataset according to data mode was not allowing delayed mode only and adjusted only variables in a dataset - improve docstrings - limit use of explicit list of parameters, fall back on using the utility list functions commit 925c1559cbe630d5076cf62d4ac86683420a998d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 10 09:59:00 2024 +0200 Update erddap_data.py - fix bug whereby user mode was not passed to downstream instances when URI was split commit 942022db6ae3053630f5dfbb437c99ae2c618cec Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 6 09:44:58 2024 +0200 Update fetchers.py commit 868188754ca7171b2b2a08cd13f961fe94ec9dd9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 6 09:35:58 2024 +0200 Update utils.py commit d76a1a52d67a217dec584a3d7375457f45f00c08 Merge: 36fca9e4 09d26995 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Sep 6 09:32:14 2024 +0200 Merge branch 'bgc-2024' into other-major-breaking-refactoring commit 09d269956f151d020b65e923c2f60854b87c4dd1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 16:40:16 2024 +0200 Update utils.py commit a484e301bb7e8f7ae18837d66021c1fbe52f0469 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 16:36:16 2024 +0200 Improve docstrings - and refactored argo_accessor into _argo commit f81842c751fcd62e88f6d77f73a6d29993963c9d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 16:35:25 2024 +0200 Add missing test data commit 29052b3b4ad629bb0e88ff11dfb87e407d87fd75 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 15:56:11 2024 +0200 Update xarray.py - fix bug whereby dataset without PSAL would raise errors with filters assuming all core parameters commit 9affe784751086cd90dd7410101cf50803454eaf Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 15:55:34 2024 +0200 Refactored register_argodataset_accessor into register_argo_accessor commit 58a8258a2b4b3116c99a9d8a972ebca0aa610b33 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 14:52:59 2024 +0200 Update test data commit eac13c5f281a502636f63edea46d67c26dc12e84 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 14:52:45 2024 +0200 improve docstrings commit a7219991ed267f4fe795517952b7233c85aff093 Merge: 62ecdabc 2f2e2dc8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Sep 5 09:25:09 2024 +0200 Merge branch 'master' into bgc-2024 commit 850adf1cbf13f4df06b74d813ffe5cc2880a4e9d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 11:14:10 2024 +0200 Deprec for 'dataset' option replaced by 'ds' commit 36fca9e4371f83adad73c0602e7f60a6fb717001 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:47:45 2024 +0200 Refactor option "dataset" into "ds" commit 4070159236db17030c2e6234226b09cb33bb24fc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:35:38 2024 +0200 Refactor option "dataset" into "ds" - for consistency with fetcher argument name "ds" commit 62ecdabceea1a4a710874b0d270ca020fee8a649 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:26:31 2024 +0200 Remove filter_data_mode_new This assume that this branch will be merged for the v1.0.0 commit 1371625cdba6ad85493353c51c9413b7d02f52b6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:12:43 2024 +0200 Update whats-new.rst commit a988d797e5c5b0bc979dadeb710fb2dc4eab6f07 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:10:43 2024 +0200 Update xarray.py commit acc789e025a18f5a1d8b5e03629e18f51edb6117 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 10:08:07 2024 +0200 Update xarray.py commit 2f2e2dc884cf5d3b39aa38339e1027260fc4c60d Merge: 7f3bbb42 bb18f4b0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 09:21:03 2024 +0200 Merge pull request #384 from euroargodev/dependabot/pip/ipython-lte-8.27.0 pip prod(deps): update ipython requirement from <=8.26.0 to <=8.27.0 merging because this only affect the documentation that seems to build ok ! commit 7f3bbb42eb5ccf4082104cda6b52f0d6d770dc0c Merge: f843a75f 47629de3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Sep 4 08:07:20 2024 +0200 Merge pull request #383 from euroargodev/argovis-use-mock Refactor Argovis CI tests to use mock server commit 47629de3af533f9f5f34ae86e030818a473a3fb1 Merge: 85b86d7c f843a75f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:18:17 2024 +0200 Merge branch 'master' into argovis-use-mock commit 85b86d7c10c7ba6dd3421d559d9f0acb31ce477e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:14:40 2024 +0200 Update whats-new.rst commit f843a75ff2eb7f7434c31d63c6c131db260edbb0 Merge: 5f46ae5c 2cb95931 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:12:26 2024 +0200 Merge pull request #382 from euroargodev/test-data-help Update mocked_http.py commit c28aab81ad69af34fc897421bec4fa3aacec8776 Merge: ad756412 5f46ae5c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:08:02 2024 +0200 Merge branch 'master' into argovis-use-mock commit 5f46ae5c1318383e37ef1fbba6d60766e21100ea Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 14:06:25 2024 +0200 [skip-ci] commit ad756412305252f098b9da0f26035d304be833aa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 13:29:37 2024 +0200 Update citests_httpdata_manager - fix codeQL commit 6e74d497838627d2a7f3aeaefb6774243c53a1d6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 13:24:53 2024 +0200 Update cheat sheet PDF commit 4c46bc8c2ff815ca31e8bfc4756eddcf4af9cc93 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 13:24:42 2024 +0200 Update xarray.py - fix deprec warning commit 2fdc1850940a4bbf04424239357e34f15c5d0c2b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Sep 3 13:24:28 2024 +0200 Update documentation - Removed "Comparison of performances" (way too slow, not useful) - New page for cheat sheet - Add icons below logo tor quick helpers - fix some errors in the docs - Update contributing - Add sections to what's new to improve TOC commit 6f681c082677549c549483649569f6e3af863edc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 2 08:54:56 2024 +0200 [skip-ci] commit 5eb412bd758e5ebbe2d4666e23b039c68753b4ee Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Sep 2 08:35:15 2024 +0200 Add missing test data commit bb18f4b061211ed3f44e955b5994cc7b63661bc2 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon Sep 2 04:29:45 2024 +0000 pip prod(deps): update ipython requirement from <=8.26.0 to <=8.27.0 Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/5.0.0...8.27.0) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> commit cc6657b4270174dac63d3148380df08c4f5d88cc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 16:23:19 2024 +0200 Fix argovis to use mock server data commit 564eb8c644c4d110e43aeafa71c91efc84663746 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 16:22:30 2024 +0200 update test data for argovis commit 628d425e0922ec331b3ebf4b03c61c272027cf21 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 15:26:34 2024 +0200 Update fetchers.py raises OptionValueError when trying to fetch argovis data in expert or research mode commit 0264174fe86d852b7b264a6ac3d0a22bda0c19ed Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 15:25:58 2024 +0200 update docstrings commit 2b0e30826a3559ed59f29b0e603558bcfbe1a1c6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 15:25:36 2024 +0200 Update test_fetchers_data_argovis.py - update argovis fetcher CI tests design commit a1f9792acfe2a59bd459e6b0a5217d4c89230f84 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 14:58:58 2024 +0200 Update utils.py commit 36a32381eed464e670288bbfeaa4ceb3bed22938 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 14:58:51 2024 +0200 Update xarray.py fix FutureWarning commit 49b29c1cd8bec78362102f0d957a8e76417ded52 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 12:02:30 2024 +0200 update cheatsheet to v0.1.16 [skip-ci] commit 2b54749f84162f75a09ca943ca81942c716c79ab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 09:52:31 2024 +0200 [skip-ci] commit 8341ecadb313280dfa19925764f2ff43bf7edc4d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 30 09:47:40 2024 +0200 Update cheatsheet PDF [skip-ci] commit 76da448555457d7ec99fd5fcd5168ca2b601dcbf Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 28 15:56:23 2024 +0200 Update mocked_http.py commit 2cb95931eb0850362420f2f57e75a872f433faab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 28 15:40:49 2024 +0200 Update mocked_http.py - Clean up docstrings - More verbose error message when test data folder is not found - Flake8 + Black this file commit da3beaa342213bb1658a7a63638e7ec9fe094843 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 27 10:04:30 2024 +0200 Misc updates post release [skip-ci] commit 97c8e46ac0e35540ab3cb17173a4e112630f5844 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 16:23:52 2024 +0200 [skip-ci] commit 7537d11fa9a7b5d0297ba12f5d5ca66e36152793 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 16:01:59 2024 +0200 [skip-ci] commit f2d654c1c2f7c67e457f30115bd880eeff49581b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 15:55:53 2024 +0200 Update argo_documentation.py commit 832dbbad099708699191e702b1253ba30ae28832 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 14:50:31 2024 +0200 Update whats-new.rst commit 2aed4b43c9ecc26832577d180b588fab7fad9cb4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 14:50:23 2024 +0200 Update fetchers.py commit f60b28d82afbb39e5e20401e21167caed3cda98c Merge: b8857dba e09eeb20 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 26 14:49:03 2024 +0200 Merge pull request #379 from euroargodev/releasev0.1.16 Prepare for v0.1.16 Flamingos Release 🦩 commit e09eeb20176703a9393bb811a359204b00182acc Merge: 17e2b52a b8857dba Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:34:41 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 17e2b52a9f642f6bc161bfb7daeed65986133669 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:31:29 2024 +0200 Pin xarray < 2024.3 commit b8857dbabfa0b4a96f111f75cb894e8068ed2944 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:30:05 2024 +0200 Pin xarray<2024.3 commit 97a20e7d4af1e0c6cacbd8158504c01b186873f6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:26:09 2024 +0200 pin xarray<2024.3 commit 3db25dbc9217e1bbf3f9ecee955d3bd0dd3fe042 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 14:24:07 2024 +0200 update test data commit 9137beb813587b5e9e3139d9ebcce99f6ee50954 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 13:51:48 2024 +0200 Clear test data commit 69cefb5cbcdde55432018e7b94bacaa843790e41 Merge: 7d1680be de0d54fd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 13:44:43 2024 +0200 Merge branch 'master' into bgc-2024 commit 8c75ef428715837a453bb9ed230e25346ab2c6cd Merge: d8a25d34 de0d54fd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 13:41:50 2024 +0200 Merge branch 'master' into releasev0.1.16 commit de0d54fd216e299b2b0438388d5710975cb0d4e2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 13:15:35 2024 +0200 Yet another update to test data 😭 commit f890a83470f2cb0503d3a17bc22aedae74e45c3d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 10:56:44 2024 +0200 Update BGC test data commit 06eed8c24aea3f6f55d8c77c25b99e9096a19297 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 10:56:18 2024 +0200 Update test_fetchers_data_erddap_bgc.py - improve debug message to better identify failing test commit 4ee991335a924d76bcc2af63995a088a788071e8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Aug 23 10:55:17 2024 +0200 Update erddap_data.py - fix bug in N_POINTS properties that was not using the real list of fetched URIs commit 966a3ebb961dcff9283627b4fc3f2a73e71325e5 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 16:12:57 2024 +0200 Restore use of mocked server commit d8a25d34617560c72ec8bff151d069c1f67b1f05 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 16:12:27 2024 +0200 Restore use of mocked server commit 94e17e3442e7ac0f3e042a3070fc94e6e8784cfa Merge: a11d0ca0 59ba8ffb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 16:02:08 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 59ba8ffb8320a108821d15d1184b198bb8b0441c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 15:55:01 2024 +0200 Updtae test data commit 788fae68a9395642f3de34c4f49594f8cd4c5879 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 15:50:01 2024 +0200 Update citests_httpdata_manager commit 83840f8d32a5bfeb4ac595cb247bc9452c24d76b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 15:49:55 2024 +0200 Update test data commit 600b49d5773bd246d7fca0c73b698774687173b3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 15:04:38 2024 +0200 More test data update commit c1e801d274601040891579ad41c95b511bcc8dfe Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:37:20 2024 +0200 🥶 😱 - implement httpstore urls_registry property: new feature taken from bgc-2024 (not merged yet) but necessary to use the citests_httpdata_manager ! - bad practice ! due to my horrible tendency to put too much in a PR commit ac694fe336b56ea88fed38f84a2459e2555d661b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:26:31 2024 +0200 Update citests_httpdata_manager commit cfe06637182eed35396ca886d4c2067fe8d3f545 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:26:20 2024 +0200 Clean up again test data commit 8348e34ee464cdd06dd91b5c4fc80d4077eacd38 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:23:56 2024 +0200 Update citests_httpdata_manager commit e1b8af412e4d5105ce859197c3d5ae51b21c1dd4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:23:46 2024 +0200 Update test_xarray_accessor.py commit 7d1680be5565a9069f840d5184c164d3d6367898 Merge: b6c84863 78ce0f73 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:03:21 2024 +0200 Merge branch 'master' into bgc-2024 commit a11d0ca07ed972b3edcdfed2dcc8b54002510bfe Merge: 3011406a 78ce0f73 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:02:22 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 78ce0f7303f7f2d5117908b49e116e7b7cd49001 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 14:02:08 2024 +0200 Add missin altim test data commit 3011406a1ab7b21533a71e575892703f9dfd2373 Merge: e7b210d6 3810eac3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 11:37:23 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 3810eac33e0e10b3d4a7d89c38e2a5e8e0377c77 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 11:36:44 2024 +0200 Update test data commit b6c848638b1c0a5771a4ad5e4eb97f923c122d54 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 10:23:54 2024 +0200 Update test_data commit 27d4f5799fe4b190912d97b2dc95a23a03da26eb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 09:39:00 2024 +0200 Update mocked_http.py - mv from pikcle to json registry file commit 8ffddde549525639767c7e8eaff40845b76a3dd9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Aug 22 09:35:20 2024 +0200 Update test data commit 058ba9b6b692afb968556ec2f8213cbf59820578 Merge: 284a5d21 1ab75e7b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 15:45:21 2024 +0200 Merge branch 'master' into bgc-2024 commit 284a5d2189d80cd1b7c7c3e00e94ca1e0715c549 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 15:41:01 2024 +0200 Clear test data commit 1ab75e7b3acd6fc7541bdab63d42d0d07ef3dbc0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 15:39:59 2024 +0200 fix for test data with new erddap commit 0578b05d9e3a72f4b1b6ce1bd20a1c2799df0fa6 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 15:39:22 2024 +0200 clear test data commit 1516689f9f1483b83e61e628c53beff7ab55c65a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:57:33 2024 +0200 citests data manager commit e3c3ee24dac11be0c2821b7e4805b9ef9ffdb274 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:51:00 2024 +0200 Update test data commit cf1722f3f6721089583267eba85573de59c8261b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:23:54 2024 +0200 Create citests_httpdata_manager_altim.json commit e7b210d614d3ad45566f2b96cc68a8ffb2566ce8 Merge: 74b54a5e 70c37bf2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:13:29 2024 +0200 Merge branch 'master' into releasev0.1.16 commit 70c37bf27ac73e08236aa2f4ff346ea4a46268b3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 10:10:34 2024 +0200 Update test data commit f7ac81ad522c9d1a7974854ed10e5185134c3487 Merge: 289a4aa8 76cb3261 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 09:27:44 2024 +0200 Merge pull request #344 from euroargodev/erddap-update Erddap update Merging anyway because fails tests are due to mocked server data to be solved and ok on master commit 76cb326175a43fb65012d338d9bcd783f2a34db0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 08:19:04 2024 +0200 Update whats-new.rst commit 9bb5ac0ae160c3670cfd12e5d5ff3b8b97d2e954 Merge: 765cd5dc 289a4aa8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 08:17:57 2024 +0200 Merge branch 'master' into erddap-update commit 74b54a5e7ff7738a1668cad02951f6e196be8370 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 08:15:56 2024 +0200 Update install.rst commit 98cd7b618b43df94de8fe83888e870f6cd85c13a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 08:00:11 2024 +0200 Misc commit 2554876505c69534e3e82bd1a42fd8532f9bd3f4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 07:59:26 2024 +0200 Upgrade py3.9 pinned versions commit c8593357c40e7abd9ec19247d0ca9d92db30cf74 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Aug 21 07:33:14 2024 +0200 Update requirements.txt commit 808e3fee62dd1e5719f509e97c076af6974e64f9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 15:49:02 2024 +0200 Update requirements.txt commit cfe17db9328ee72f3f218ca06adbb7b6b0014425 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 15:48:57 2024 +0200 Remove py 3.8 env files commit 3c25411bd2e236f2335c8a5f14633689ef2b0e10 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 15:26:47 2024 +0200 Update readthedocs.yml commit b937fbd6c72874671baeb49e00ee99d1a35159f7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 14:16:27 2024 +0200 Update impact.rst commit c062ee06453e96b51335c6408093bda178ee4b32 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 14:16:24 2024 +0200 Update rtd env commit 90e66251c6b43963140dca790e5b671e868df52b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 11:00:11 2024 +0200 xarray < 2024.3 in pinned env commit 36708d5c47fc5743d8eccaa5612f65e00d7347c9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:56:51 2024 +0200 xarray < 2024.3 while https://github.com/pydata/xarray/issues/8909 is not solved commit 860f3ec0345c8dca4b4e63d2679924c50bc072f7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:41:34 2024 +0200 Update casting.py - delete deprecated `cast_types` commit 844b4150b9e2b6b212b3afda1b62dd47a9c79ce0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:41:10 2024 +0200 fix 3.10 env commit f4fb3833c61f3e61260d5c16545471be6981f2bb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:28:34 2024 +0200 More 3.10 CI tests support commit a3df8851374e686718af58f1fbfca1f367bc98d3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Aug 20 10:27:18 2024 +0200 Improve show_versions following support for py 3.10 commit 7a98bc132e5015230e39303adef54e54b5aa9ae9 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 16:48:35 2024 +0200 Add support for python 3.10, drop 3.8 commit c1fc7c01058457e9050e40ec360024036ed040d5 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:51:12 2024 +0200 Delete utilities.py commit 755de3c908a56a7c8dc1ea8407b3e733859d566c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:50:59 2024 +0200 black + flake8 commit e52a9ea47d0c7442df03c7ab0a5c575e8f4f3f49 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:24:48 2024 +0200 Codespell commit 0c227bf22754fb480b23765273658df091a8efb0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:24:41 2024 +0200 Update setup.py commit baa3033e5997582bd84bace65b02bbae2757cfbd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:17:19 2024 +0200 Update whats-new.rst commit 765cd5dc1e9504d21827169ada293748b91e8eec Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:03:33 2024 +0200 Update test data for erddap commit 64c3582a54c48a62d066c81e61abeed2af66cff3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 15:03:09 2024 +0200 Update test_fetchers_data_erddap_bgc.py - removed unneeded test commit 289a4aa8391cb4cf08a605bbe4dc23a945e9081b Merge: 8102bfef 39daa57b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:59:43 2024 +0200 Merge pull request #378 from euroargodev/377-content-response-from-nerc-vocabulary-server-seems-change-that-makes-argonvsreferencetables-fail Update ArgoNVSReferenceTables to handle new NVS server output format commit b461ed202a9013696be1b0b0d2e564bc4641d696 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:25:32 2024 +0200 Update test_fetchers_data_erddap.py commit 39daa57beb81ad3867063ec22d3c324dc47cf89c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:06:14 2024 +0200 Update test data for new NVS server responses commit e49498ef90156ab0a1f3dcfb7ec96d26fc4827df Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:05:36 2024 +0200 Update test_related.py - fix for new server keys commit 6996dc3d646b510c067118dc999b8c0ddd369ea1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 14:05:13 2024 +0200 Update reference_tables.py - fix to use new keys commit 3cb02e02de370b7df43f6e533d6ae6ed30c0f743 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Aug 19 11:29:16 2024 +0200 Update whats-new.rst commit de218b10477ae0d9d3569184610e2c155d8edffe Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 15:33:07 2024 +0200 Update test data commit 20ea26b4ef20796d8c5f30f357a15210c036d75e Merge: 6853f05f 8102bfef Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 15:27:06 2024 +0200 Merge branch 'master' into bgc-2024 commit 6853f05f273b613763ab4016acb34cf477cd6146 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 15:20:21 2024 +0200 Add CLI folder to git commit 17c8fb7ed9e7543338d5553eddc33c7c9ac9de7e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 15:15:54 2024 +0200 Update erddap_data.py - fix bug mal-formatting url for ref dataset commit c9eb9a34d1ab546a151f1ef9c7719af1db1a464d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 14:19:18 2024 +0200 Update xarray.py - fix bug in filter_researchmode commit b6af5f61704a7a5cc34a5dc171c6beb152fa69c0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 13:50:49 2024 +0200 Update mocked_http.py move from pickle to json db file in tests data commit d9746e5de6286cf39b484828d1ca366e17fd3553 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 13:50:15 2024 +0200 Update erddap_data.py - removed BGC measurements constraints on the erddap request because it is too unstable - latitude and longitude must not be NaN - pres/temp/psal adjusted not nan in research mode in the erddap request - fix bug in N_POINTS properties that was not using the effective URI to be fetched commit 4ad0e784910c08eb14b6760789dbca805aaade85 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 10:40:13 2024 +0200 Update erddap_data.py - fix bug where by in research mode URL was still using pres instead of pres_adjusted commit ca18b0d0d6940addfe3e679148ec7e58857a218b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 10:39:25 2024 +0200 Re-activate mock server with erddap tests commit dc3ab40d408d00105b0c6ef0a3006f015a46d564 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 10:38:47 2024 +0200 Improve coverage commit 044602adb32357ef47e101a8b9526eb0bbc6a8b3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 19 10:38:32 2024 +0200 Update tutorial.py commit 1aa3ed452d646025c56ef9e1fc3927c03bdf459b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 18 14:13:49 2024 +0200 Update proto.py fix bug in data fetcher proto sha not unique for different user modes commit 02264fdc24c9b650edce3bf3c6db9619370d14b1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 18 14:13:12 2024 +0200 Update xarray.py commit 654b53a1f7241cfada94f1640f8578364c0466a8 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 17 09:33:08 2024 +0200 Use real erddap server in CI tests commit 8102bfef6268ddfe6bec72296deae33d7bd21234 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 16 11:46:17 2024 +0200 Remove US GODAE ftp references Closes #320 commit 6f761426aa3d874dcf28c4cfb70f09fdf69ea480 Merge: d2bb38ba feecd02b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 16 11:29:34 2024 +0200 Merge branch 'master' into erddap-update commit feecd02be81ee39e55f5aa32cfaf9db5e481d1cd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 17:22:01 2024 +0200 Update whats-new.rst commit 814ae7fa7fa6a739189970459af307b3bbc0997f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 16:17:12 2024 +0200 Update filesystems.py commit 3655bc80064ec8e0dc4fecd8f9b5a951158c8654 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 16:17:09 2024 +0200 update test data commit 8c38f1357d792ab9df2ebe878fd4e5e421603d5c Merge: 16762975 470a3d9f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 15:15:05 2024 +0200 Merge branch 'master' into bgc-2024 commit d2bb38ba128f05841b4f333ec3db92c4384805af Merge: e76d2e58 470a3d9f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 14:24:30 2024 +0200 Merge branch 'master' into erddap-update commit 470a3d9f9cfa297d249364929499ca0ff8d86618 Merge: 542fd241 70c01269 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 14:21:28 2024 +0200 Merge pull request #326 from euroargodev/gdac-amazons3 S3 support commit 70c0126990972afb864342e42ad7e390f39fe4ae Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 12:58:20 2024 +0200 Upper bound on xarray < 2024.3 Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex' commit ed29bd0e9d20e6cebdd1e524a4ba0b48ff609789 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 11:25:44 2024 +0200 Upper bound on xarray < 2024.4 Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex' commit a89b8c90e5ca28a74390381d746e43b661a27ccb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 10:34:12 2024 +0200 upper bound on xarray < 2024.5 Fixing upstream tests: AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex' commit e76d2e5819f239eeb30a2249a84e72b15c2d0286 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 10:32:22 2024 +0200 Update erddap_refdata.py commit 8ca8cd160016b503901e329464534241e768837a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 12 10:00:53 2024 +0200 Upper bound on xarray AttributeError: 'ScipyArrayWrapper' object has no attribute 'oindex' https://github.com/pydata/xarray/issues/8909 commit 6b8b3a816554d2bca7ffe33040caff12e2502ca4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 15:56:52 2024 +0200 Update xarray.py fix upstream numpy.exceptions.DTypePromotionError commit 4f27289f89d609e287affb7aa08c5df0fb5f20da Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 15:56:41 2024 +0200 Update gdacftp_data.py commit ef055ee76be77180b6f6a6c0b110d627d29e8f65 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 15:56:39 2024 +0200 Update __init__.py commit 8af82c7ed47b67f744b36fef2adb17f3fe0fd97e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 15:10:40 2024 +0200 Update gdacftp_data.py commit 8c0b32d04d40a95be90a6f985bfc10d1d6496e67 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:27:13 2024 +0200 Update test_stores_index.py commit c18b2ad0140b238162df637102b5dc071f43e04e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:26:57 2024 +0200 Update test_stores_index.py commit 6901a9c64351ff6dde76cbe396ded7427661e9bb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:26:29 2024 +0200 Update test_stores_index.py commit d49a3291e14d82090a33a48839ece9dc26d65070 Merge: 50760d16 d702ada5 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:24:51 2024 +0200 Merge branch 'erddap-update' of https://github.com/euroargodev/argopy into erddap-update commit 50760d16a4c88dce3b2f0f446316dec0e9c510cd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jul 11 14:24:48 2024 +0200 Update erddap_data.py commit d702ada5488b86a8b9a06fcac5a7163ba012582e Merge: 98429124 542fd241 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:55:26 2024 +0200 Merge branch 'master' into erddap-update commit 9842912453062284242aebf3d86a08371d050e64 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:52:11 2024 +0200 drop support for erddapy < 0.8 commit e677992b602f3db3500929f6dd9cf5a75de90425 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:43:48 2024 +0200 Update filesystems.py commit 59912390357de72decc54f100c3298403735530a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:38:17 2024 +0200 Update argo_index_proto_s3.py commit fbdbb1f1073f1dcd2e5bbd13bdf04169f9ebfbfa Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 16:35:58 2024 +0200 misc [skip-ci] commit 50560f7da051182b814cd68cc204aba18c5899c5 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 15:53:14 2024 +0200 [skip-ci] commit 0443ae441605609a595318e6f98d242ebb0a5869 Merge: 77260939 542fd241 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 14:54:03 2024 +0200 Merge branch 'master' into gdac-amazons3 commit 542fd241c99b3a11e2448c7bf5b4da99c11f7edd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 14:49:07 2024 +0200 Update workflows to access s3 creds commit 77260939b34efcba1c391994e86207c8897b3493 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 14:46:24 2024 +0200 update workflow to access s3 commit 26e06e99a9bf160588a16e9fbe925e72f31081e7 Merge: a357439e 0c8d7e42 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 11:20:57 2024 +0200 Merge pull request #371 from bkatiemills/argovisV2 basic integration of argovis API 2.x commit 0c8d7e42f7f54f2a975c56a4ae88ff428ce6fb55 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:50:01 2024 +0200 Update whats-new.rst commit 604af4e3eefa53a38e75eb8cf4d1cf1a4c8dc582 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:47:15 2024 +0200 Update argovis_data.py commit a2e47a2370e7333cf9afdd2d880e6b513411a24c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:37:31 2024 +0200 Update argovis_data.py commit 86c042e95fea5f504c4d64fd2ee8340df0d83963 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:37:22 2024 +0200 Update options.py points to argovis key generator commit f51d4485a5541c42362ac78b057d6e2494d8dbfd Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:28:53 2024 +0200 Update filesystems.py - fix bug in merging user arguments for the http file store instance commit f49aaed3a764216ac09886832776a1854d8890cb Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jul 10 09:07:06 2024 +0200 Update options.py Add missing checker for new `argovis_api_key` option commit 3747d251ee1054fea217f5cac11fe2ceb307fa5b Merge: 9b053b67 6037f6ad Author: bkatiemills <you@example.com> Date: Tue Jul 9 14:42:44 2024 -0400 Merge branch 'argovisV2' of https://github.com/bkatiemills/argopy into argovisV2 commit 9b053b67033578fe16e3a394b595b922ad79f31a Author: bkatiemills <you@example.com> Date: Tue Jul 9 14:38:46 2024 -0400 argovis API key injection commit b88de82a631b17a501b4919c674c3042aeb50f4a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 18:26:59 2024 +0200 misc - local tests ok commit 6037f6ad8c3bc759bcd8eb8957bd148051a7f882 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 16:41:31 2024 +0200 Update whats-new.rst commit 3d2aecfe4d285d1a9a8386505cc13fcfea7e65d3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 16:33:34 2024 +0200 Removed obsolete filter_domain because https://github.com/euroargodev/argopy/issues/48 is closed commit 16762975b657b56f1c5c650e5e8bd6941cda4ec3 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 12:06:06 2024 +0200 Add URL registry for erddap fetcher - force the indexfs to use the httpstore from the fetcher - add a registry in the httpstore commit c79cb360d7d87b2719a326e7f6517aed1d0dff7a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 11:27:49 2024 +0200 Update erddap_data.py - add checker on BGC parameters provided in params and measured, raises a ValueError if parameters is not found commit 29ddf8723021bba621c809aa117f264842a08698 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 9 11:01:07 2024 +0200 misc - refactor _bgc_vlist_requested to _bgc_vlist_params for consistancy - improve docstrings - turn off mocked server for erddap tests commit c4e8c9c36406e4d9d145e39a1be5e50a295213bc Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:48:03 2024 +0200 fix CI tests commit 84aeef29a4b4d4491309405bd3bb022c59aacabe Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:30:25 2024 +0200 removed unused raiseNoDataLeft commit f5df4e7bd1abceaabe669af54fdec5feeab55067 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:21:35 2024 +0200 Apply Black on xarray commit e959d7fd7bdc9f6f7b07c122dfbb8c8e8c8da662 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:12:35 2024 +0200 Better docstrings commit 3c4b355a2e6d0ce31f1379cb43ffbb14dcf8efac Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 17:12:10 2024 +0200 Update fetchers to use correct filter_data_mode commit 361f12cb1abd5b8c076e445ace275e77f761ea2d Merge: 83b95018 a357439e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 16:42:42 2024 +0200 Merge branch 'master' into bgc-2024 commit 83b9501849254f826830fcb760ae5170185b2689 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 16:41:35 2024 +0200 Add deprecation policy for filter_data_mode - mark 'filter_data_mode' as deprecated while preserving legacy behavior - new, correct 'filter_data_mode' is temporarily at 'filter_data_mode' commit a357439e44f411bd04303ab810a9ad246fd51f60 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 8 16:31:05 2024 +0200 Upgrade deprecated decorator - allows to be ignored from some caller - introduce version argument commit ffa3ff243354a0fad98cba9c830d8b1f2046b6e5 Author: bkatiemills <you@example.com> Date: Fri Jul 5 14:11:37 2024 -0400 box region queries commit 9aa1ba36e2278cdb001c316c227328daf7389c0a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 5 15:26:57 2024 +0200 Fix missing lists from utils commit 9a7c4188cffaedc2601018f84e21bb4a40a9a232 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jul 5 15:11:37 2024 +0200 catching up - allow for ds='bgc-s' in place of ds='bgc' - new decorator raiseNoDataLeft - better docstrings - fix llcache/lscache cli - DataNotFound and NoDataLeft inherits from NoData - some internal refactoring in facade commit 41174a7db49dc48c3207dbf84c1aa08decb9eaef Author: bkatiemills <you@example.com> Date: Thu Jul 4 15:56:42 2024 -0400 provide correct liveness probe endpoint to api_server_check commit f476f3ebe608dde67a3b88d4c285c378f0f73856 Author: bkatiemills <you@example.com> Date: Tue Jul 2 12:40:38 2024 -0400 basic integration of argovis API 2.x commit 0372f38fa8285b98dd4a7bfd908ce88d9e6fa7f4 Merge: d370d33c d5148290 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jul 2 10:10:11 2024 +0200 Merge pull request #370 from euroargodev/dependabot/pip/ipython-lte-8.26.0 pip prod(deps): update ipython requirement from <=8.25.0 to <=8.26.0 commit d370d33c2a1ca5a86992e214e642af1c4f0e46ac Merge: fb3f9117 8978d83d Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jul 1 09:31:24 2024 +0200 Merge pull request #367 from green-coding-solutions/eco-ci-v4 Eco-CI v4.0-rc3 commit d51482906f073deb9412f4a2d03440cdaa8dc74f Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon Jul 1 04:28:30 2024 +0000 pip prod(deps): update ipython requirement from <=8.25.0 to <=8.26.0 Updates the requirements on [ipython](https://github.com/ipython/ipython) to permit the latest version. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/5.0.0...8.26.0) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> commit 8978d83d18e073c6fced620f4beb7205a4d742c0 Author: Arne Tarara <arne@datafuse.de> Date: Sat Jun 29 21:53:30 2024 +0200 Removed pr-comment and PR write permissions commit fb3f9117545c27b30702444806a93e3bfaff454c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 21 14:39:48 2024 +0200 New impact section in the doc commit bfe9e91ecae3846736c8b0b8e7ae335110c6aa70 Author: Arne Tarara <arne@datafuse.de> Date: Tue Jun 18 15:14:21 2024 +0200 UPSTREAM added in other workflow commit 9df2cb0f64816b7a11911b0e71009966dc22000d Author: Arne Tarara <arne@datafuse.de> Date: Tue Jun 18 15:12:18 2024 +0200 Moved to v4.0-rc3; Adding PR-Comments; removed supeflous UUID mentions; Added machine-uuid commit 49f5ea2f01fd7d1c2b94d773b6df611cb712ad8b Merge: 233ed147 b3daa650 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 18 10:44:18 2024 +0200 Merge pull request #366 from euroargodev/dependabot/github_actions/codecov/codecov-action-4.5.0 Bump codecov/codecov-action from 4.4.1 to 4.5.0 commit b3daa6506fed9829293baa8de5fda02e31b51c8a Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon Jun 17 04:34:22 2024 +0000 Bump codecov/codecov-action from 4.4.1 to 4.5.0 Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.4.1 to 4.5.0. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/v4.4.1...v4.5.0) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> commit a23e93f71d176f50308a50feb9875bde86b98785 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 18:48:13 2024 +0200 Update argo_index_proto_s3.py commit 38d4a785244d75a681a3aba318ed4a4e679f31ab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 18:05:18 2024 +0200 Update argo_index_proto_s3.py commit b43fbebbb79cf3ca961c09ec2abc7496e9209d70 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 15:32:48 2024 +0200 Update argo_index_proto_s3.py commit 68e362b06081e00d92e71eb68d4cd85a1f0e16e4 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 15:30:07 2024 +0200 Update argo_index_proto_s3.py more log info for CI tests debug commit 233ed147e39cbb5805e7fc73108f90c09abf962b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 10:58:03 2024 +0200 Fix bug in the facade commit 9055e71e89758c770a3aeed641102b4121e8dcb7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 10:55:50 2024 +0200 Fix bug in the facade commit a7cff79f0671b636cb220dbbaba519ec0bd7386a Merge: f6269e9f 9de84079 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 09:58:38 2024 +0200 Merge branch 'master' into gdac-amazons3 commit f6269e9fd361406177d26dbf73518cd97b76201a Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 14 09:41:27 2024 +0200 Update argo_index_proto_s3.py commit c8d546d97d4b444e2547680264baa759d923157c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 17:45:14 2024 +0200 Add new bgc-s and ngc-b dataset This shall allows to make the difference between the synthetic and the other BGC files commit 148beb06e1308d7b7d111abd90e15e78f83a2795 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 16:22:29 2024 +0200 New split_data_mode transform so that we can handle PARAMETER_DATA_MODE commit 1ea391e617d9db38276d529c786985b27b02a196 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 16:21:52 2024 +0200 Update canyon_med.py commit 2dde63be5cee80a5f66b70a7e40345ec51344193 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 16:21:36 2024 +0200 Update gdacftp_data.py Preserve original netcdf file attrs commit a7231f36588ad5b0cf18d36adde2c808368e76d7 Merge: 9bc14033 8d59c03e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 13 09:39:15 2024 +0200 Merge branch 'bgc-2024-canyon' into bgc-2024 commit 9bc14033e504181f779cdc00fb5aa77d3c6974ae Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 17:08:21 2024 +0200 Fix docstrings commit 8d59c03ea211dbe2d0a1e921ecec3c8e6460f3f1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:55:33 2024 +0200 Update canyon_med.py commit d5bc78c6f0c30cc2f36a8dc539c90cc433706463 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:45:24 2024 +0200 Add mask to ensure that input measurements are in the Mediterranean Sea commit 2fa392e645143d3e679b37f6a5049b85475a9ab7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:18:49 2024 +0200 Update extensions sub-module - Create proto class for inheritance commit 79b98a7a7008af59a8a5ba62eb1ae1fa1bc49120 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:00:24 2024 +0200 Update documentation commit 6a4633d55670ab1f114147622574c5710f95a527 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 16:00:01 2024 +0200 New 'extensions' submodule - In this sub-module, we shall find all methods/classes that will be used an "extension" to the xarray Argo accessor - The goal is to facilitate the dev of more extensions for new comers - Refactor Canyon-MED in the new 'extensions' submodule commit cc7a86994855924d7c0d430e42b5cec26382d705 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 10:17:24 2024 +0200 Bring CanyonMED to argopy ! commit d3a90602d1fc4d5f135c18a7e2ac2779fa9d0652 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 10:17:10 2024 +0200 misc commit ce11e5008fb31cde981f5e3052ab2035f588b1ab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 12 10:16:41 2024 +0200 New register_argodataset_accessor This would be a simple mechanism to provide extensions to the argo xarray accessor commit e6ade192f48095788c1e46b91e55e119a5d8ff07 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 19:46:38 2024 +0200 CANYON-MED NN weights commit afbe4d9cc615cb9284bdddeadffd181fb1f8f4ab Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 19:45:03 2024 +0200 kick start commit f552cb98ac77a0989db2983396580fbe5aa538a7 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 19:38:52 2024 +0200 Add support BGC HDF5 netcdf file commit bac1387b226de5ee7c9b36ee72e3b4a8c87bcd27 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 17:47:58 2024 +0200 fix bugs here and there commit 1657ed02d4acc7fb9d2a21db4e8e41d7fed73095 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:29:19 2024 +0200 Improve filters commit a569adc58f1f492039459f10d656909507045180 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:29:06 2024 +0200 more BGC var/param listing - list_bgc_s_variables, list_bgc_s_parameters - list_radiometry_variables, list_radiometry_parameters - list_core_parameters commit f047945e19c3617e9f603b025dc7dabb519d5e8e Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:27:01 2024 +0200 Update fetchers.py - add postprocessors for BGC commit cf38c5b6a11deaf80f05cd3fd716fcb93dd6d7b0 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:26:30 2024 +0200 Update proto.py Update filter_variables to support BGC commit 63d12722569b99b933bd367c8e75b86bfd9c272b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Tue Jun 11 13:26:00 2024 +0200 Add user_mode properties to low-level fetchers commit 7e0bb4d3dfe0ee3f9e0f0bf8f53728151ded343f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 18:58:46 2024 +0200 New filter_data_mode, not backward compatible - Add filter_data_mode that really filter the data according to their DATA MODE (previous version was actually merging PARAM and PARAM_ADJUSTED, this is now done by transform_data_mode commit 5a96ff6e8470710512b6ff720a74bd05480b309c Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 18:53:32 2024 +0200 Cleaner postprocessor definition in the facade commit da89110c7c90fba5516f03952d2ea83194e5eff2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 09:26:19 2024 +0200 Update erddap_data.py - fix list of bgc variables to request and their constraints - reduced final checks in to_xarray for bgc to filter_measured - delete filter_points, new filter_measured - filter_measured applies to <PARAM> OR <PARAM>_ADJUSTED commit 930fc6413ae95f0dfd6b6411e1d4e89b90aaa63f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 09:06:44 2024 +0200 docstring commit fe59468fce557f1c70c919d661bb2289b5082e35 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Mon Jun 10 09:06:31 2024 +0200 Update fetchers.py - fix bug in to_index data fetcher method whereby the index could differ from the dataset commit e22be870214102684494230aa9335e66c201c76b Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 16:05:15 2024 +0200 Update test data commit 2265e6205c238e4cfa067367068a36fc61369f89 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 15:26:05 2024 +0200 breaking change: renamed argo.filter_data_mode into argo.transform_data_mode commit 5592efcb59a41cb5ef68de382f6689df49e1bad1 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 14:51:43 2024 +0200 New xarray.argo.transform_data_mode - based on new utility merge_param_with_param_adjusted commit 861ff3148cdedf894c2270059f8a2471a982668e Merge: 6696a73d 9de84079 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 10:34:34 2024 +0200 Merge branch 'master' into bgc-2024 commit 9de84079c2a7aa99f7883690519b3cd3d53461a2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 10:34:20 2024 +0200 [skip-ci] commit be454e15ea08cd9deacb248391040a08b8db2301 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 10:29:42 2024 +0200 Update doi_snapshot.py commit 4bc51bdc61bf1f3a031df9d26fd7f3ce0293b96f Author: Guillaume Maze <gmaze@ifremer.fr> Date: Fri Jun 7 10:16:29 2024 +0200 Add ArgoDOI to argopy API documentation commit 6696a73dc3623e15435e4168b87695184297adb2 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 6 16:33:27 2024 +0200 Update xarray.py - don't remember why these variables were included, not consistant ... commit a9561e4f158dc18c967e20f04756d1874768ac64 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 6 16:33:04 2024 +0200 Update erddap_data.py - start support for more user mode in BGC commit b378da1d05e660e6ef618316352868007b59bc26 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Thu Jun 6 16:31:31 2024 +0200 Add support for the "aux" index file + bug fix - fix bug with shortcuts in ArgoIndex file and convention - the ArgoIndex now support the "etc/argo-index/argo_aux-profile_index.txt" index file commit b9800a69087b223e8d3f9df92b113a1b30d87091 Author: Guillaume Maze <gmaze@ifremer.fr> Date: Wed Jun 5 09:47:16 2024 +0200 Update erddap_data.py commit 229de718d415a7c4f378c395bc179461ed6798e1 Author: Guillaume Maze <gmaze@ifremer.fr> Date:…
Place holder for work kicked off during 2024 LOV visit.
Closes #361
Adressed #363
What's in this PR:
transform_data_mode
, that is doing what was doing thefilter_data_mode
method before, but this method was very badly named: merge PARAM with PARAM_ADJUSTED according to DATA_MODE valuesfilter_data_mode
is now really doing what is was supposed to do: filter points according to data mode valuespostprocessing
method in the data fetcher facade, so that it clearly implement user mode requirements for 'phy' and 'bgc' datasetauxiliary
index in the ``etc` GDAC folderPoke @Sauzede and @catsch
Breaking changes in the API:
history
is replaced byProcessing_history
filter_data_mode
filter_data_mode
astransform_data_mode