Merge pull request #37 from evenmn/docs2

Fixed cross-references
evenmn · Aug 23, 2023 · cf30fb5 · cf30fb5
2 parents 3faeaa5 + 48f21fb
commit cf30fb5
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/docs/source/args.rst b/docs/source/args.rst
@@ -9,7 +9,7 @@ When launching a LAMMPS simulation, the general command
 
     mpirun <mpi_args> <lmp_exec> <lmp_args>
 
-is executed. :code:`mpi_args` usually contains the flag :code:`-n <num_procs>`, and :code:`-hostfile hostfile` is added if :code:`activate_virtual=True` (see `activate virtual cores`_). For the LAMMPS command line arguments :code:`lmp_args`, the flag :code:`-in <lmp_exec>` is always included, with :code:`lmp_exec` being the LAMMPS executable. How to pass custom MPI and LAMMPS arguments is described below.
+is executed. :code:`mpi_args` usually contains the flag :code:`-n <num_procs>`, and :code:`-hostfile hostfile` is added if :code:`activate_virtual=True` (see :ref:`activate virtual cores`). For the LAMMPS command line arguments :code:`lmp_args`, the flag :code:`-in <lmp_exec>` is always included, with :code:`lmp_exec` being the LAMMPS executable. How to pass custom MPI and LAMMPS arguments is described below.
 
 
 MPI arguments

diff --git a/docs/source/installation.rst b/docs/source/installation.rst
@@ -20,5 +20,5 @@ Prerequisites
 
 1. Python 3.3+ (subprocess.DEVNULL from 3.3 needed)
 2. `NumPy <https://numpy.org>`_
-3. `LAMMPS (any recent version) <https://lammps.sandia.gov>_
+3. `LAMMPS (any recent version) <https://lammps.sandia.gov>`_
 
diff --git a/docs/source/runscript.rst b/docs/source/runscript.rst
@@ -23,7 +23,7 @@ Sometimes it can be useful to define a :code:`Device` object, especially when ru
    device = CPU(num_procs=4, lmp_exec="lmp")
    sim.run(device=device)
 
-Other devices include :code:`GPU` (run LAMMPS with the :code:`GPU` or :code:`KOKKOS` package), :code:`SlurmCPU` (submit LAMMPS CPU jobs to Slurm) and :code:`SlurmGPU` (submit LAMMPS GPU jobs to Slurm). The Slurm support is further described in the `Slurm`_-section.
+Other devices include :code:`GPU` (run LAMMPS with the :code:`GPU` or :code:`KOKKOS` package), :code:`SlurmCPU` (submit LAMMPS CPU jobs to Slurm) and :code:`SlurmGPU` (submit LAMMPS GPU jobs to Slurm). The Slurm support is further described in the :ref:`Slurm`-section.
 
 .. _activate virtual cores:
 
@@ -52,4 +52,4 @@ By doing this, a simulation can be run both on the physical and the virtual core
    sim.set_input_script("script.in")
    sim.run(num_procs=4, lmp_exec="lmp", activate_virtual=True)
 
-For more information about MPI command line arguments, see `command line arguments`_.
+For more information about MPI command line arguments, see :ref:`command line arguments`.