Update logback-test.xml to remove unnecessary logging to \tmp\spring.log

Remove logback-spring.xml from exomiser-data-genome, exomiser-data-phenotype
exomiser · Feb 28, 2024 · 28c03dc · 28c03dc
1 parent 1dfd0a4
commit 28c03dc
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Showing 12 changed files with 39 additions and 154 deletions.
diff --git a/exomiser-cli/src/main/resources/application.properties b/exomiser-cli/src/main/resources/application.properties
@@ -79,4 +79,6 @@ exomiser.phenotype.data-version=2402
 #spring.cache.caffeine.spec=maximumSize=60000
 
 ### logging ###
-#logging.file.name=logs/exomiser.log
+# Logging is highly configurable - see https://docs.spring.io/spring-boot/docs/current/reference/html/features.html#features.logging.file-output
+#logging.file.name=logs/exomiser.log
+logging.level.com.zaxxer.hikari=ERROR
diff --git a/exomiser-cli/src/test/resources/logback-test.xml b/exomiser-cli/src/test/resources/logback-test.xml
@@ -20,7 +20,12 @@
   -->
 
 <configuration>
-    <include resource="org/springframework/boot/logging/logback/base.xml" />
+    <include resource="org/springframework/boot/logging/logback/defaults.xml" />
+    <include resource="org/springframework/boot/logging/logback/console-appender.xml" />
+    <root level="INFO">
+        <appender-ref ref="CONSOLE" />
+    </root>
+    <logger name="com.zaxxer.hikari" level="ERROR"/>
     <logger name="org.springframework" level="ERROR"/>
     <logger name="org.thymeleaf" level="ERROR"/>
 </configuration>
diff --git a/exomiser-core/src/test/resources/logback-test.xml b/exomiser-core/src/test/resources/logback-test.xml
@@ -20,8 +20,12 @@
   -->
 
 <configuration>
-    <include resource="org/springframework/boot/logging/logback/base.xml" />
-    <logger name="org.monarchinitiative.exomiser.core.genome.VariantFactoryImpl" level="ERROR"/>
+    <include resource="org/springframework/boot/logging/logback/defaults.xml" />
+    <include resource="org/springframework/boot/logging/logback/console-appender.xml" />
+    <root level="INFO">
+        <appender-ref ref="CONSOLE" />
+    </root>
+    <logger name="com.zaxxer.hikari" level="ERROR"/>
     <logger name="org.springframework" level="ERROR"/>
     <logger name="org.thymeleaf" level="ERROR"/>
 </configuration>
diff --git a/exomiser-data-genome/src/main/resources/logback-spring.xml b/exomiser-data-genome/src/main/resources/logback-spring.xml
diff --git a/exomiser-data-genome/src/test/resources/logback-test.xml b/exomiser-data-genome/src/test/resources/logback-test.xml
@@ -20,7 +20,12 @@
   -->
 
 <configuration>
-    <include resource="org/springframework/boot/logging/logback/base.xml" />
+    <include resource="org/springframework/boot/logging/logback/defaults.xml" />
+    <include resource="org/springframework/boot/logging/logback/console-appender.xml" />
+    <root level="INFO">
+        <appender-ref ref="CONSOLE" />
+    </root>
+    <logger name="com.zaxxer.hikari" level="ERROR"/>
     <logger name="org.springframework" level="ERROR"/>
     <logger name="org.thymeleaf" level="ERROR"/>
 </configuration>
diff --git a/exomiser-data-phenotype/src/main/resources/logback-spring.xml b/exomiser-data-phenotype/src/main/resources/logback-spring.xml
diff --git a/exomiser-data-phenotype/src/test/resources/logback-test.xml b/exomiser-data-phenotype/src/test/resources/logback-test.xml
@@ -20,7 +20,12 @@
   -->
 
 <configuration>
-    <include resource="org/springframework/boot/logging/logback/base.xml" />
+    <include resource="org/springframework/boot/logging/logback/defaults.xml" />
+    <include resource="org/springframework/boot/logging/logback/console-appender.xml" />
+    <root level="INFO">
+        <appender-ref ref="CONSOLE" />
+    </root>
+    <logger name="com.zaxxer.hikari" level="ERROR"/>
     <logger name="org.springframework" level="ERROR"/>
     <logger name="org.thymeleaf" level="ERROR"/>
-</configuration>
+</configuration>
diff --git a/exomiser-rest-prioritiser/src/test/resources/logback-test.xml b/exomiser-rest-prioritiser/src/test/resources/logback-test.xml
@@ -20,7 +20,12 @@
   -->
 
 <configuration>
-    <include resource="org/springframework/boot/logging/logback/base.xml" />
+    <include resource="org/springframework/boot/logging/logback/defaults.xml" />
+    <include resource="org/springframework/boot/logging/logback/console-appender.xml" />
+    <root level="INFO">
+        <appender-ref ref="CONSOLE" />
+    </root>
+    <logger name="com.zaxxer.hikari" level="ERROR"/>
     <logger name="org.springframework" level="ERROR"/>
     <logger name="org.thymeleaf" level="ERROR"/>
 </configuration>
diff --git a/exomiser-spring-boot-autoconfigure/src/test/resources/logback-test.xml b/exomiser-spring-boot-autoconfigure/src/test/resources/logback-test.xml
@@ -20,7 +20,11 @@
   -->
 
 <configuration>
-    <include resource="org/springframework/boot/logging/logback/base.xml" />
+    <include resource="org/springframework/boot/logging/logback/defaults.xml" />
+    <include resource="org/springframework/boot/logging/logback/console-appender.xml" />
+    <root level="INFO">
+        <appender-ref ref="CONSOLE" />
+    </root>
     <logger name="org.springframework" level="ERROR"/>
     <logger name="org.thymeleaf" level="ERROR"/>
     <logger name="org.flywaydb" level="ERROR"/>

diff --git a/exomiser-spring-boot-test/src/test/resources/logback-test.xml b/exomiser-spring-boot-test/src/test/resources/logback-test.xml
diff --git a/exomiser-web/src/main/resources/logback-spring.xml b/exomiser-web/src/main/resources/logback-spring.xml
diff --git a/exomiser-web/src/test/resources/logback-test.xml b/exomiser-web/src/test/resources/logback-test.xml