Update exomiser-cli application.properties to use 2402 data and add i…

…n default clinvar data options.

exomiser-cli/src/main/resources/application.properties

@@ -35,7 +35,7 @@ remm.version=0.3.1.post1
 cadd.version=1.4
 
 ### hg19 assembly ###
-exomiser.hg19.data-version=2109
+exomiser.hg19.data-version=2402
 # transcript source will default to ensembl. Can define as ucsc/ensembl/refseq
 #exomiser.hg19.transcript-source=ensembl
 # location of CADD/REMM Tabix files - you will need these for analysis of non-coding variants.
@@ -46,16 +46,20 @@ exomiser.hg19.data-version=2109
 #exomiser.hg19.remm-path=${exomiser.data-directory}/remm/ReMM.v${remm.version}.hg19.tsv.gz
 # local frequencies are required to be normalised in the same manner as the input VCF and frequency values must be percentages.
 #exomiser.hg19.local-frequency-path=${exomiser.data-directory}/local/local_frequency_test_hg19.tsv.gz
-exomiser.hg19.variant-white-list-path=${exomiser.hg19.data-version}_hg19_clinvar_whitelist.tsv.gz
+#exomiser.hg19.variant-white-list-path=${exomiser.hg19.data-version}_hg19_clinvar_whitelist.tsv.gz
+#exomiser.hg19.clin-var-data-version=2402
+#exomiser.hg19.use-clinvar-white-list=true
 
 ### hg38 assembly ###
 # To enable analysis of samples called against the hg38 assembly copy the hg19 above and just replace the hg19 with hg38
-#exomiser.hg38.data-version=2109
+#exomiser.hg38.data-version=2402
 #exomiser.hg38.cadd-snv-path=${exomiser.data-directory}/cadd/${cadd.version}/whole_genome_SNVs.tsv.gz
 #exomiser.hg38.cadd-in-del-path=${exomiser.data-directory}/cadd/${cadd.version}/InDels.tsv.gz
 #exomiser.hg38.remm-path=${exomiser.data-directory}/remm/ReMM.v${remm.version}.hg38.tsv.gz
 #exomiser.hg38.local-frequency-path=${exomiser.data-directory}/local/local_frequency_test_hg38.tsv.gz
 #exomiser.hg38.variant-white-list-path=${exomiser.hg38.data-version}_hg38_clinvar_whitelist.tsv.gz
+#exomiser.hg38.clin-var-data-version=2402
+#exomiser.hg38.use-clinvar-white-list=true
 
 ### phenotypes ###
 exomiser.phenotype.data-version=2109