Fix svart update issues from merge of 13.3.0 into development in Jann…

…ovarStructuralVariantAnnotatorTest
exomiser · Oct 26, 2023 · 74864d8 · 74864d8
1 parent 7e8f306
commit 74864d8
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/...va/org/monarchinitiative/exomiser/core/genome/JannovarStructuralVariantAnnotatorTest.java b/...va/org/monarchinitiative/exomiser/core/genome/JannovarStructuralVariantAnnotatorTest.java
@@ -119,7 +119,7 @@ public void exonicDeletion() {
     @Test
     public void wholeGeneInversion() {
         // FGFR2 10:123237848-123357972
-        Variant variant = variant(chr10, 123237800, 123358000, "T", "<INV>", 0);
+        GenomicVariant variant = variant(chr10, 123237800, 123358000, "T", "<INV>", 0);
         List<VariantAnnotation> annotations = instance.annotate(variant);
         System.out.println(annotations);
 
@@ -135,7 +135,7 @@ public void wholeGeneInversion() {
     @Test
     public void singleExonInversion() {
         // FGFR2 10:123237848-123357972
-        Variant variant = variant(chr10, 123357475, 123357972, "T", "<INV>", 0);
+        GenomicVariant variant = variant(chr10, 123357475, 123357972, "T", "<INV>", 0);
         List<VariantAnnotation> annotations = instance.annotate(variant);
 
         assertThat(annotations.size(), equalTo(1));
@@ -150,7 +150,7 @@ public void singleExonInversion() {
     @Test
     public void upstreamGeneInversion() {
         // FGFR2 10:123237848-123357972
-        Variant variant = variant(chr10, 123358000, 123359000, "T", "<INV>", 0);
+        GenomicVariant variant = variant(chr10, 123358000, 123359000, "T", "<INV>", 0);
         List<VariantAnnotation> annotations = instance.annotate(variant);
 
         assertThat(annotations.size(), equalTo(1));