bands

Chromosome bands plotting

Features

It is a stub/unfinished and I cannot work on it right now. So feel free to update it, I may provide some support from time to time.

It is not yet published on pypi, install it with:

pip install git+https://github.com/fbrundu/bands

The first argument contains the data for the genes you want to plot. It should be a pandas DataFrame formatted similarly to a bedfile, with columns:

"Chr" (name of the chromosome for the gene)
"Start" (start coordinate of the gene)
"Stop" (end coordinate of the gene)
"Name" (name/symbol/etc. for the gene)
"colors" (color to associate to the gene in the map, it should be a string in the form, e.g., "#ffffff" for white - you don't want to color too many genes or the figure may get very crowded)

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
.github		.github
bands		bands
docs		docs
tests		tests
.editorconfig		.editorconfig
.gitignore		.gitignore
.travis.yml		.travis.yml
AUTHORS.rst		AUTHORS.rst
CONTRIBUTING.rst		CONTRIBUTING.rst
HISTORY.rst		HISTORY.rst
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
Makefile		Makefile
README.rst		README.rst
requirements_dev.txt		requirements_dev.txt
setup.cfg		setup.cfg
setup.py		setup.py
tox.ini		tox.ini
travis_pypi_setup.py		travis_pypi_setup.py