Initial commit #1

Workflow file for this run

.github/workflows/render-all.yml at b369e22


	# Candace Savonen Apr 2021

	name: Render all output courses

	on:
	workflow_dispatch:
	push:
	branches: [ main, staging ]
	paths:
	- '**.Rmd'
	- assets/*

	jobs:

	yaml-check:
	name: Load user automation choices
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v3

	# Use the yaml-env-action action.
	- name: Load environment from YAML
	uses: doughepi/yaml-env-action@v1.0.0
	with:
	files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence.
	outputs:
	toggle_bookdown: "${{ env.RENDER_BOOKDOWN }}"
	toggle_coursera: "${{ env.RENDER_COURSERA }}"
	toggle_leanpub: "${{ env.RENDER_LEANPUB }}"
	rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}"
	toggle_quiz_check: "${{ env.CHECK_QUIZZES }}"

	render-bookdown:
	name: Render bookdown
	needs: yaml-check
	runs-on: ubuntu-latest
	container:
	image: ${{needs.yaml-check.outputs.rendering_docker_image}}
	if: ${{needs.yaml-check.outputs.toggle_bookdown == 'yes'}}

	steps:
	- name: checkout
	uses: actions/checkout@v3
	with:
	fetch-depth: 0
	token: ${{ secrets.GH_PAT }}

	- name: Login as jhudsl-robot
	run: \|
	git config --system --add safe.directory "$GITHUB_WORKSPACE"
	git config --local user.email "itcrtrainingnetwork@gmail.com"
	git config --local user.name "jhudsl-robot"

	# We want a fresh run of the renders each time
	- name: Delete old docs/*
	run: rm -rf docs/*

	# Make sure the link for AnVIL feedback is prepopulated for the specific course
	- name: Set up feedback link
	id: feedback
	run: bash scripts/AnVIL_Feedback_Script.sh

	# Run bookdown rendering
	- name: Run bookdown render
	id: bookdown
	run: \|
	Rscript -e "bookdown::render_book('index.Rmd', output_format = 'all');
	file.copy(from = 'assets', to = 'docs/assets', overwrite = TRUE)"

	# Render a student guide if specified. This is a bit clunky because
	# Bookdown does not work well if the files aren't named as such in the
	# root directory
	- name: Run student guide render
	if: ${{needs.yaml-check.outputs.render_student_guide == 'yes'}}
	id: student_guide
	run: \|
	mkdir tmp1
	mv _bookdown.yml _output.yml tmp1
	mv student-guide/_bookdown.yml student-guide/_output.yml .
	Rscript -e "bookdown::render_book('index.Rmd', output_format = 'all')"
	mv _bookdown.yml _output.yml student-guide
	mv tmp1/_bookdown.yml tmp1/_output.yml .
	rm -r tmp1

	# This checks on the steps before it and makes sure that they completed.
	# If the renders didn't complete we don't want to commit the file changes
	- name: Check on render step
	if: steps.bookdown.outcome != 'success'
	run: \|
	echo Bookdown status ${{steps.bookdown.outcome}}
	exit 1

	# Commit the rendered bookdown files
	- name: Commit rendered bookdown files
	env:
	GH_PAT: ${{ secrets.GH_PAT }}
	run: \|
	git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
	git add --force docs/*
	git commit -m 'Render bookdown' \|\| echo "No changes to commit"
	git pull --allow-unrelated-histories --strategy-option=ours
	git push origin main \|\| echo "No changes to push"

	render-tocless:
	name: Render TOC-less version for Leanpub or Coursera
	needs: [yaml-check]
	runs-on: ubuntu-latest
	container:
	image: ${{needs.yaml-check.outputs.rendering_docker_image}}
	if: ${{needs.yaml-check.outputs.toggle_coursera == 'yes' \|\| needs.yaml-check.outputs.toggle_leanpub == 'yes'}}

	steps:
	- name: checkout
	uses: actions/checkout@v3
	with:
	fetch-depth: 0
	token: ${{ secrets.GH_PAT }}

	- name: Login as jhudsl-robot
	run: \|
	git config --system --add safe.directory "$GITHUB_WORKSPACE"
	git config --local user.email "itcrtrainingnetwork@gmail.com"
	git config --local user.name "jhudsl-robot"

	# Rendered content for Leanpub and Coursera is very similar.
	# This job creates a shared scaffold for both.
	- name: Run TOC-less version of render
	id: tocless
	run: Rscript -e "ottrpal::render_without_toc()"

	# Commit the TOC-less version files
	- name: Commit tocless bookdown files
	env:
	GH_PAT: ${{ secrets.GH_PAT }}
	run: \|
	git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
	git add --force docs/no_toc*
	git commit -m 'Render toc-less' \|\| echo "No changes to commit"
	git pull --allow-unrelated-histories --strategy-option=ours
	git push origin main \|\| echo "No changes to push"

	render-leanpub:
	name: Finish Leanpub prep
	needs: [yaml-check, render-tocless]
	runs-on: ubuntu-latest
	container:
	image: jhudsl/ottrpal:main
	if: ${{needs.yaml-check.outputs.toggle_leanpub == 'yes'}}

	steps:
	- name: checkout
	uses: actions/checkout@v3
	with:
	fetch-depth: 0
	token: ${{ secrets.GH_PAT }}

	- name: Login as jhudsl-robot
	run: \|
	git config --system --add safe.directory "$GITHUB_WORKSPACE"
	git config --local user.email "itcrtrainingnetwork@gmail.com"
	git config --local user.name "jhudsl-robot"

	# Create screenshots
	- name: Run the screenshot creation
	run: \|
	# Remove old folder
	rm -rf resources/chapt_screen_images

	# Make new screenshots
	chapt_urls=$(Rscript --vanilla scripts/make_screenshots.R \
	--git_pat ${{ secrets.GH_PAT }} \
	--repo $GITHUB_REPOSITORY \
	--output_dir resources/chapt_screen_images)

	# We want a fresh run of the renders each time
	- name: Delete old manuscript/
	run: rm -rf manuscript/

	- name: Run ottrpal::bookdown_to_embed_leanpub
	if: needs.yaml-check.outputs.toggle_quiz_check == 'no'
	run: \|
	Rscript -e "ottrpal::bookdown_to_embed_leanpub(
	render = FALSE, \
	chapt_img_key = 'resources/chapt_screen_images/chapter_urls.tsv', \
	make_book_txt = TRUE, \
	quiz_dir = NULL)"

	- name: Run ottrpal::bookdown_to_embed_leanpub
	if: needs.yaml-check.outputs.toggle_quiz_check == 'yes'
	run: \|
	Rscript -e "ottrpal::bookdown_to_embed_leanpub(
	render = FALSE, \
	chapt_img_key = 'resources/chapt_screen_images/chapter_urls.tsv', \
	make_book_txt = TRUE)"

	# Commit the rendered Leanpub files
	- name: Commit rendered Leanpub files
	env:
	GH_PAT: ${{ secrets.GH_PAT }}
	run: \|
	mkdir -p manuscript
	git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
	git add --force manuscript/*
	git add --force resources/*
	git add --force docs/*
	git commit -m 'Render Leanpub' \|\| echo "No changes to commit"
	git pull --allow-unrelated-histories --strategy-option=ours
	git push origin main \|\| echo "No changes to push"

	render-coursera:
	name: Finish Coursera prep
	needs: [yaml-check, render-tocless]
	runs-on: ubuntu-latest
	container:
	image: ${{needs.yaml-check.outputs.rendering_docker_image}}
	if: ${{needs.yaml-check.outputs.toggle_coursera == 'yes'}}

	steps:
	- name: checkout
	uses: actions/checkout@v3
	with:
	fetch-depth: 0
	token: ${{ secrets.GH_PAT }}

	- name: Login as jhudsl-robot
	run: \|
	git config --system --add safe.directory "$GITHUB_WORKSPACE"
	git config --local user.email "itcrtrainingnetwork@gmail.com"
	git config --local user.name "jhudsl-robot"

	# Run Coursera version
	- name: Convert Leanpub quizzes to Coursera
	if: needs.yaml-check.outputs.toggle_leanpub == 'yes' && needs.yaml-check.outputs.toggle_quiz_check == 'yes'
	id: coursera
	run: Rscript -e "ottrpal::convert_coursera_quizzes()"

	# Commit the rendered bookdown files
	- name: Commit rendered Coursera files
	env:
	GH_PAT: ${{ secrets.GH_PAT }}
	run: \|
	git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
	git add --force manuscript/*
	git add --force resources/*
	git add --force docs/*
	git commit -m 'Render Coursera quizzes' \|\| echo "No changes to commit"
	git pull --allow-unrelated-histories --strategy-option=ours
	git push origin main \|\| echo "No changes to push"

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Initial commit #1

Workflow file

Initial commit #1

Jobs

Run details

Workflow file for this run