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Add option to compute distances from gene TES only ('--edge=tes') #77

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merged 4 commits into from
Feb 8, 2024

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@pjbriggs pjbriggs commented Feb 5, 2024

Updates the --edge option to allow the user to specify gene TES as the reference point for calculating distances to peaks (similar to the existing option to specify the TSS).

As well as changes to the CLI to add tes as a valid option for the --edge argument, the underlying code has been modified to enable this additional. Specifically the find_nearest_features and find_nearest_peaks functions no longer support the boolean tss_only argument, instead it has been replaced by the use_edge argument (which must be a string with one of tss, tes or both).

@pjbriggs pjbriggs force-pushed the add-edge-tes-option branch from 7d184ab to 17638a6 Compare February 6, 2024 16:30
@pjbriggs pjbriggs merged commit e8022cb into devel Feb 8, 2024
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@pjbriggs pjbriggs deleted the add-edge-tes-option branch February 8, 2024 11:57
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