Make objects for plate and well acquisitions #175
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| name: tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - main | |
| tags: | |
| - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10 | |
| pull_request: | |
| branches: | |
| - main | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| matrix: | |
| # platform: [ubuntu-latest, windows-latest, macos-latest] | |
| platform: [ubuntu-latest] | |
| python-version: [3.9, '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # note: if you need dependencies from conda, considering using | |
| # setup-miniconda: https://github.com/conda-incubator/setup-miniconda | |
| # and | |
| # tox-conda: https://github.com/tox-dev/tox-conda | |
| - name: Set up conda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2.0.0 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| - name: Conda info | |
| shell: bash -l {0} | |
| run: conda info | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pytest pytest-cov | |
| pip install -e . | |
| # pip install setuptools tox tox-gh-actions | |
| # # conda install -c defaults scipy is needed otherwise tests crash on Windows due to FileNotFoundError. Remove this when the problem is fixed | |
| # # this runs the platform-specific tests declared in tox.ini | |
| # - name: Test with tox | |
| # run: tox | |
| # env: | |
| # PLATFORM: ${{ matrix.platform }} | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: pytest -v --cov=./ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| # deploy: | |
| # # this will run when you have tagged a commit, starting with "v*" | |
| # # and requires that you have put your twine API key in your | |
| # # github secrets (see readme for details) | |
| # needs: [test] | |
| # runs-on: ubuntu-latest | |
| # if: contains(github.ref, 'tags') | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Set up Python | |
| # uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: "3.x" | |
| # - name: Install dependencies | |
| # run: | | |
| # python -m pip install --upgrade pip | |
| # pip install -U setuptools setuptools_scm wheel twine build | |
| # - name: Build and publish | |
| # env: | |
| # TWINE_USERNAME: __token__ | |
| # TWINE_PASSWORD: ${{ secrets.TWINE_API_KEY }} | |
| # run: | | |
| # git tag | |
| # python -m build . | |
| # twine upload dist/* |