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[ngio] Refactor masked_loading_wrapper logic to do relabeling in the masking step
ngio
#787
opened Jul 12, 2024 by
jluethi
Review/optimize use of Backlog issues we may eventually fix, but aren't a priority
performance
testing
get_overlapping_pairs_3D
in Cellpose task
Backlog
#779
opened Jul 3, 2024 by
tcompa
Relax pip v24.0 pin in Pull requests that update a dependency file
testing
manifest_external_packages.yml
dependencies
#773
opened Jun 27, 2024 by
tcompa
ROI upsampling issue when original image resolution is not divisible by 2
ngio
#771
opened Jun 26, 2024 by
jluethi
Verify compatibility with Python 3.12
dependencies
Pull requests that update a dependency file
testing
#770
opened Jun 26, 2024 by
tcompa
Doc updates
documentation
Improvements or additions to documentation
#766
opened Jun 17, 2024 by
tcompa
[cellpose segmentation task]
label
or wavelength_id
for ChannelInputModel
#762
opened Jun 11, 2024 by
BioinfoTongLI
Possible path towards improvements of tasks JSON schemas
JSON Schemas
#758
opened Jun 10, 2024 by
tcompa
Allow developers to influence schema building in finer detail
JSON Schemas
#755
opened Jun 7, 2024 by
jluethi
Make Cellpose task work for OME-Zarrs without pyramids
good first issue
maintenance
#742
opened May 18, 2024 by
BioinfoTongLI
Centralize copying of tables functionality
ngio
OME-Zarr reader/writer
#725
opened Apr 24, 2024 by
jluethi
Drop image list updates with only updated_images_urls
good first issue
#721
opened Apr 24, 2024 by
jluethi
Enable other packages reusing tasks from fractal-tasks-core compound tasks
#704
opened Apr 15, 2024 by
jluethi
Add unit tests for
fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py
helper functions
testing
#696
opened Apr 11, 2024 by
tcompa
In
calculate_registration_image_based
, should we check that zarr_url != reference_zarr_url
?
fractal_v2
#695
opened Apr 11, 2024 by
tcompa
Add unit test for
create_well_acquisition_dict
fractal_v2
testing
#693
opened Apr 11, 2024 by
tcompa
Add unit test for AnnData and ROI/feature tables
testing
get_tables_list_v1
fractal_v2
good first issue
Tables
#692
opened Apr 11, 2024 by
tcompa
Test the multi-plate case of
create_cellvoyager_ome_zarr_init
testing
#688
opened Apr 10, 2024 by
jluethi
Illumination Correction with Channel parallelisation
enhancement
New feature or request
fractal_v2
#687
opened Apr 10, 2024 by
jluethi
Improve handling of potential existing zarr files in apply_registration_to_image
#683
opened Apr 10, 2024 by
jluethi
Review NGFF models & Fractal OME-Zarr models
enhancement
New feature or request
ngio
OME-Zarr reader/writer
#681
opened Apr 9, 2024 by
tcompa
Consider including
OMEZarrImage
class in fractal-tasks-core
ngio
OME-Zarr reader/writer
#678
opened Apr 4, 2024 by
jluethi
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