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72 Open 431 Closed
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Issues list

Allow overwrite of existing image in apply registration
#800 opened Jul 16, 2024 by jluethi
@jluethi
[ngio] Refactor masked_loading_wrapper logic to do relabeling in the masking step ngio
#787 opened Jul 12, 2024 by jluethi
1
Review/optimize use of get_overlapping_pairs_3D in Cellpose task Backlog Backlog issues we may eventually fix, but aren't a priority performance testing
#779 opened Jul 3, 2024 by tcompa
3
Relax pip v24.0 pin in manifest_external_packages.yml dependencies Pull requests that update a dependency file testing
#773 opened Jun 27, 2024 by tcompa
ROI upsampling issue when original image resolution is not divisible by 2 ngio
#771 opened Jun 26, 2024 by jluethi
Verify compatibility with Python 3.12 dependencies Pull requests that update a dependency file testing
#770 opened Jun 26, 2024 by tcompa
2
Doc updates documentation Improvements or additions to documentation
#766 opened Jun 17, 2024 by tcompa
[cellpose segmentation task] label or wavelength_id for ChannelInputModel
#762 opened Jun 11, 2024 by BioinfoTongLI
1
Possible path towards improvements of tasks JSON schemas JSON Schemas
#758 opened Jun 10, 2024 by tcompa
1
Allow conditional fields & either/or logic JSON Schemas
#756 opened Jun 7, 2024 by jluethi
2
Allow developers to influence schema building in finer detail JSON Schemas
#755 opened Jun 7, 2024 by jluethi
1
Use new Zenodo datasets in tests
#753 opened Jun 7, 2024 by jluethi
2 tasks done
@tcompa
2
Make Cellpose task work for OME-Zarrs without pyramids good first issue maintenance
#742 opened May 18, 2024 by BioinfoTongLI
4
Centralize copying of tables functionality ngio OME-Zarr reader/writer
#725 opened Apr 24, 2024 by jluethi
Drop image list updates with only updated_images_urls good first issue
#721 opened Apr 24, 2024 by jluethi
Enable other packages reusing tasks from fractal-tasks-core compound tasks
#704 opened Apr 15, 2024 by jluethi
3
Add unit tests for fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py helper functions testing
#696 opened Apr 11, 2024 by tcompa
In calculate_registration_image_based, should we check that zarr_url != reference_zarr_url? fractal_v2
#695 opened Apr 11, 2024 by tcompa
1
Add unit test for create_well_acquisition_dict fractal_v2 testing
#693 opened Apr 11, 2024 by tcompa
Add unit test for get_tables_list_v1 fractal_v2 good first issue Tables AnnData and ROI/feature tables testing
#692 opened Apr 11, 2024 by tcompa
Test the multi-plate case of create_cellvoyager_ome_zarr_init testing
#688 opened Apr 10, 2024 by jluethi
1
Illumination Correction with Channel parallelisation enhancement New feature or request fractal_v2
#687 opened Apr 10, 2024 by jluethi
@jluethi
Improve handling of potential existing zarr files in apply_registration_to_image
#683 opened Apr 10, 2024 by jluethi
Review NGFF models & Fractal OME-Zarr models enhancement New feature or request ngio OME-Zarr reader/writer
#681 opened Apr 9, 2024 by tcompa
4
Consider including OMEZarrImage class in fractal-tasks-core ngio OME-Zarr reader/writer
#678 opened Apr 4, 2024 by jluethi
1
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