Merge pull request #10 from fractal-analytics-platform/remote_zarrs #56
Workflow file for this run
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| name: Build Docs | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| jobs: | |
| deploy: | |
| name: Deploy Docs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: 🐍 Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| cache-dependency-path: "pyproject.toml" | |
| cache: "pip" | |
| - name: Download Dataset from Zenodo | |
| run: | | |
| mkdir -p data | |
| wget -O data/dataset.zip https://zenodo.org/records/13305156/files/20200812-CardiomyocyteDifferentiation14-Cycle1.zarr.zip?download=1? | |
| unzip -o data/dataset.zip -d data | |
| - name: Download Dataset from Zenodo MIP | |
| run: | | |
| mkdir -p data | |
| wget -O data/dataset.zip https://zenodo.org/records/13305316/files/20200812-CardiomyocyteDifferentiation14-Cycle1_mip.zarr.zip?download=1? | |
| unzip -o data/dataset.zip -d data | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install -U pip | |
| python -m pip install .[dev2] | |
| python -m pip install .[docs] | |
| - name: 📚 Build Docs | |
| run: mkdocs build --clean | |
| # If something goes wrong with --pre tests, we can open an issue in the repo | |
| - name: Deploy Docs | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| personal_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./site |