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Release 2.3.0
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@nh13 nh13 released this 16 Jul 14:54
· 12 commits to main since this release
2.3.0
57d2ed5

What's Changed

  • Add a Zenodo DOI to the README by @nh13 in #955
  • PileupBuilder should not report insertions when checking the final mapped base before soft-clipping by @jrm5100 in #956
  • fix: ensure that the GroupReadsByUmiTests for marking duplicates are by @nh13 in #962
  • fix: mapped header records should overwrite unmapped in ZipperBams by @nh13 in #963
  • Fix typo in ExtractUmisFromBam.scala by @nh13 in #966
  • ZipperBams to produce mate score ("ms") for samtools markdup by @nh13 in #952
  • Make PileupBuilder.includeMapPositionsOutsideFrInsert intuitively correct by @clintval in #981
  • doc: update description of consenus tags for duplex by @nh13 in #983
  • Update UpdateGffContigNames.scala (typo in docs) by @yfarjoun in #985
  • Add conda install instructions to README by @clintval in #988
  • Add TemplateCoordinate sort order to the usage of SortBam by @nh13 in #993
  • Create CODEOWNERS by @nh13 in #999
  • feat: add --umi-prefix to CopyUmiFromReadName by @msto in #958
  • Validate IO in SortBam to provide nicer exceptions by @nh13 in #994
  • Improve the list of tools in the README.md by @nh13 in #991
  • doc: fix duplicate "the" in sequence dictionary docstrings by @nh13 in #1000

New Contributors

Full Changelog: 2.2.1...2.3.0

Contributors

msto, nh13, and 3 other contributors
Assets 3
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