DEVIUM

Dynamic MultivariatE Data Analysis and VIsUalization PlatforM

Source all devium R functions from github

source("http://pastebin.com/raw.php?i=UyDBTA57")

[DeviumWeb] (https://github.com/dgrapov/DeviumWeb)

Browser-based GUI for devium implemented in R and Shiny (under development).

Examples

Check out some prototypes and examples of the analyses implemented in Devium on the demo server.

• Heirarchical Cluster Analysis
• [Basic Plotting] (http://spark.rstudio.com/dgrapov/Plotting/)
• [Principal Components Analysis Diagnostics] (http://spark.rstudio.com/dgrapov/PCA/)
• Metabolomic Network Generation

TODO

• remove GTK GUI code (see below)

[GTK] (http://www.gtk.org/)

(obsolete see DeviumWeb)

• GUI using RGtk2 toolkit implemented with gWidgests

• Dynamic plotting - base and ggplot2

• Linked brushing of multiple plots - iplots

• Network Visualizations - igraph (static, interactive and 3D), Cytoscape (RCytoscape)

• Analyses - univariate and multivariate

• Automated report generation - rsweave

• Data import and linking with MS Excel and Google Spreadsheets

• Successor to imDEV, including improved interface and capabilities

Installation of GTK GUI

Eventually devium will be installed from R as a package and from alternative repositories where it can be bundled with GTK+ components. For now it can be installed by using the source code in the devium/R directory. Copy and paste the following code in to R to source the necessary files.

#load package from github repo
source("http://pastebin.com/raw.php?i=JVyTrYRD")

#check out some of the functions (accesory objects will be cleaned up)
objects()

#launch GUI (watch R console for messages regarding the downloading of dependancies)
devium.gui()

Note if you don't yet have the GTK+ toolkit installed you need to specify to "Install GTK+" when prompted from the R command line.