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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 214 110

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 192 46

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 96 91

  4. task-execution-schemas task-execution-schemas Public

    82 29

  5. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    82 38

  6. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 80 34

Repositories

Showing 10 of 125 repositories
  • va-spec Public

    An information model for representing variant annotations.

    ga4gh/va-spec’s past year of commit activity
    Jupyter Notebook 17 Apache-2.0 4 103 (2 issues need help) 2 Updated Nov 26, 2024
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    ga4gh/cat-vrs’s past year of commit activity
    Makefile 1 Apache-2.0 2 6 0 Updated Nov 26, 2024
  • quality-control-wgs Public

    Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

    ga4gh/quality-control-wgs’s past year of commit activity
    Jupyter Notebook 14 Apache-2.0 3 5 2 Updated Nov 25, 2024
  • gks-metaschema Public

    Tools and scripts for parsing the GKS standards metaschemas

    ga4gh/gks-metaschema’s past year of commit activity
    Python 0 Apache-2.0 3 6 (1 issue needs help) 1 Updated Nov 25, 2024
  • vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    ga4gh/vrs’s past year of commit activity
    Jupyter Notebook 80 Apache-2.0 34 29 (1 issue needs help) 6 Updated Nov 25, 2024
  • gks-core Public

    Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)

    ga4gh/gks-core’s past year of commit activity
    Python 2 Apache-2.0 0 1 1 Updated Nov 25, 2024
  • TASC Public

    TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.

    ga4gh/TASC’s past year of commit activity
    8 7 17 2 Updated Nov 25, 2024
  • refget Public

    GA4GH Refget specifications docs

    ga4gh/refget’s past year of commit activity
    HTML 14 7 22 2 Updated Nov 20, 2024
  • ga4gh-starter-kit-drs Public

    Open, extensible server implementation of the GA4GH Data Repository Service (DRS) specification

    ga4gh/ga4gh-starter-kit-drs’s past year of commit activity
    Java 4 Apache-2.0 7 9 (1 issue needs help) 1 Updated Nov 20, 2024
  • fasp-clients Public

    a place for client code from the FASP effort

    ga4gh/fasp-clients’s past year of commit activity
    Python 2 Apache-2.0 3 6 0 Updated Nov 17, 2024
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