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The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines

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JAX NGS Operations Nextflow DSL2 Pipelines

This repository contains production bioinformatic analysis pipelines.

Pipeline Level Documentation, Quick Start, and Developer Documentation:

Please see the Wiki documentation associated with this repository for all documentation.

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The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines

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  • Nextflow 64.0%
  • Python 22.5%
  • R 11.2%
  • Shell 1.2%
  • Other 1.1%