Merge pull request #105 from gaelforget/v0p2p19a

use static version of example.html when rerun skipped
gaelforget · Jul 24, 2023 · 2ee1931 · 2ee1931
2 parents d844f87 + f2639ef
commit 2ee1931
Show file tree

Hide file tree

Showing 4 changed files with 12 additions and 11 deletions.
diff --git a/README.md b/README.md
@@ -16,9 +16,9 @@ Notebooks listed below are also found in [the docs](https://gaelforget.github.io
 
 - [random walk model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/RandomWalker.html)  (0D, Julia)
 - [ShallowWaters.jl model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/ShallowWaters.html) (2D, Julia)
-- [Oceananigans.jl model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/Oceananigans.html) (3D, Julia)
-- [Hector climate model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/Hector.html) (global, C++)
-- [FaIR climate model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/FaIR.html) (global, Python)
+- [Oceananigans.jl model](http://www.gaelforget.net/notebooks/Oceananigans.html) (3D, Julia)
+- [Hector climate model](http://www.gaelforget.net/notebooks/Hector.html) (global, C++)
+- [FaIR climate model](http://www.gaelforget.net/notebooks/FaIR.html) (global, Python)
 - [SPEEDY atmosphere model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/Speedy.html) (3D, Fortran90)
 - [MITgcm general circulation model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/MITgcm.html) (3D, Fortran)
 
@@ -31,7 +31,7 @@ Notebooks listed below are also found in [the docs](https://gaelforget.github.io
 
 - [IPCC report 2021](https://gaelforget.github.io/ClimateModels.jl/dev/examples/IPCC.html) (NetCDF, CSV)
 - [CMIP6 model output](https://gaelforget.github.io/ClimateModels.jl/dev/examples/CMIP6.html) (Zarr)
-- [ECMWF IFS 1km](https://gaelforget.github.io/ClimateModels.jl/v0.2.7/examples/IFS1km_notebook.html) (NetCDF)
+- [ECMWF IFS 1km](http://www.gaelforget.net/notebooks/IFS1km_notebook.html) (NetCDF)
 - [ECCO version 4](https://gaelforget.github.io/OceanStateEstimation.jl/dev/examples/ECCO_standard_plots.html) (NetCDF)
 - [Pathway Simulations](https://gaelforget.github.io/MITgcmTools.jl/dev/examples/HS94_particles.html) (binary, jld2)
 

diff --git a/docs/make.jl b/docs/make.jl
@@ -2,10 +2,11 @@ using Documenter, ClimateModels, CairoMakie, Pkg
 import PlutoSliderServer
 Pkg.precompile()
 
-lst=("defaults.jl","RandomWalker.jl","ShallowWaters.jl","Hector.jl","MITgcm.jl","Speedy.jl","CMIP6.jl","IPCC.jl")
+lst=("defaults.jl","RandomWalker.jl","ShallowWaters.jl","MITgcm.jl","Speedy.jl","CMIP6.jl","IPCC.jl")
 #"FaIR.jl"
 #"Oceananigans.jl"
 #"IFS1km_notebook.jl"
+#"Hector.jl"
 
 do_run_notebooks=true
 

diff --git a/docs/src/examples.md b/docs/src/examples.md
@@ -26,17 +26,17 @@ In [User Manual](@ref manual), the [Climate Model Interface](@ref) section outli
 
 - [Random Walk model](RandomWalker.html) (Julia) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/RandomWalker.jl)
 - [ShallowWaters.jl model](ShallowWaters.html) (Julia) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/ShallowWaters.jl)
-- [Oceananigans.jl model](https://gaelforget.github.io/ClimateModels.jl/v0.2.7/examples/Oceananigans.html) (Julia) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/Oceananigans.jl)
-- [Hector global climate model](Hector.html) (C++) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/Hector.jl)
-- [FaIR global climate model](FaIR.html) (Python) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/FaIR.jl)
+- [Oceananigans.jl model](http://www.gaelforget.net/notebooks/Oceananigans.html) (Julia) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/Oceananigans.jl)
+- [Hector global climate model](http://www.gaelforget.net/notebooks/Hector.html) (C++) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/Hector.jl)
+- [FaIR global climate model](http://www.gaelforget.net/notebooks/FaIR.html) (Python) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/FaIR.jl)
 - [SPEEDY atmosphere model](Speedy.html) (Fortran90) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/Speedy.jl)
 - [MITgcm general circulation model](MITgcm.html) (Fortran) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/MITgcm.jl)
 
 ## [Workflows That Replay Models](@id replay_model_examples)
 
 - [IPCC report 2021](IPCC.html) (NetCDF, CSV) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/IPCC.jl)
 - [CMIP6 model output](CMIP6.html) (Zarr) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/CMIP6.jl)
-- [ECMWF IFS 1km](https://gaelforget.github.io/ClimateModels.jl/v0.2.7/examples/IFS1km_notebook.html) (NetCDF) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/IFS1km.jl)
+- [ECMWF IFS 1km](http://www.gaelforget.net/notebooks/IFS1km_notebook.html) (NetCDF) ➭ [code link](https://raw.githubusercontent.com/gaelforget/ClimateModels.jl/master/examples/IFS1km.jl)
 - [ECCO version 4](https://JuliaOcean.github.io/OceanStateEstimation.jl/dev/examples/ECCO_standard_plots.html) (NetCDF) ➭ [code link](https://raw.githubusercontent.com/gaelforget/OceanStateEstimation.jl/master/examples/ECCO/ECCO_standard_plots.jl)
 - [Pathway Simulations](https://gaelforget.github.io/MITgcmTools.jl/dev/examples/HS94_particles.html) (binary, jld2) ➭ [code link](https://raw.githubusercontent.com/gaelforget/MITgcmTools.jl/master/examples/HS94_particles.jl)
 

diff --git a/docs/src/functionalities.md b/docs/src/functionalities.md
@@ -83,10 +83,10 @@ A key point is that everything can be customized to, e.g., use popular models pr
 
 The simplest way to use the `ClimateModels.jl` interface is to specify `model` directly as a function, and use defaults for everything else, as illustrated in [random walk](../examples/RandomWalker.html). Alternatively, the `model` name can be provided as a `String` and the main `Function` as the `configuration`, as in [CMIP6](../examples/CMIP6.html).
 
-Often, however, one may want to define custom `setup`, `build`, or `launch` methods. To this end, one can define a concrete type of `AbstractModelConfig` using [`ModelConfig`](@ref) as a blueprint. This is the recommended approach when other languanges like Fortran or Python are involved (e.g., [Hector](../examples/Hector.html), [FaIR](../examples/FaIR.html), [SPEEDY](../examples/Speedy.html), [MITgcm](../examples/MITgcm.html)). 
+Often, however, one may want to define custom `setup`, `build`, or `launch` methods. To this end, one can define a concrete type of `AbstractModelConfig` using [`ModelConfig`](@ref) as a blueprint. This is the recommended approach when other languanges like Fortran or Python are involved (e.g., [Hector](http://www.gaelforget.net/notebooks/Hector.html), [FaIR](http://www.gaelforget.net/notebooks/FaIR.html), [SPEEDY](../examples/Speedy.html), [MITgcm](../examples/MITgcm.html)). 
 
 !!! note
-    Defining a concrete type of `AbstractModelConfig` can also be practical with pure Julia model, e.g. to speed up [`launch`](@ref), generate ensembles, facilitate checkpointing, etc. That's the case in the [Oceananigans.jl](../examples/Oceananigans.html) example.
+    Defining a concrete type of `AbstractModelConfig` can also be practical with pure Julia model, e.g. to speed up [`launch`](@ref), generate ensembles, facilitate checkpointing, etc. That's the case in the [Oceananigans.jl](http://www.gaelforget.net/notebooks/Oceananigans.html) example.
 
 For popular models the customized interface elements can be provided via a dedicated package. This may allow them to be maintained independently by developers and users most familiar with each model. [MITgcmTools.jl](https://github.com/gaelforget/MITgcmTools.jl) does this for [MITgcm](https://mitgcm.readthedocs.io/en/latest/). It provides its own suite of examples that use the `ClimateModels.jl` interface.