update notebook dependencies

README.md

@@ -16,9 +16,9 @@ Notebooks listed below are also found in [the docs](https://gaelforget.github.io
 
 - [random walk model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/RandomWalker.html) (0D, Julia)
 - [ShallowWaters.jl model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/ShallowWaters.html) (2D, Julia)
-- [Oceananigans.jl model](http://www.gaelforget.net/notebooks/Oceananigans.html) (3D, Julia)
-- [Hector climate model](http://www.gaelforget.net/notebooks/Hector.html) (global, C++)
-- [FaIR climate model](http://www.gaelforget.net/notebooks/FaIR.html) (global, Python)
+- [Oceananigans.jl model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/Oceananigans.html) (3D, Julia)
+- [Hector climate model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/Hector.html) (global, C++)
+- [FaIR climate model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/FaIR.html) (global, Python)
 - [SPEEDY atmosphere model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/Speedy.html) (3D, Fortran90)
 - [MITgcm general circulation model](https://gaelforget.github.io/ClimateModels.jl/dev/examples/MITgcm.html) (3D, Fortran)
 

docs/src/ClimateModelsJuliaCon2021.jl

@@ -299,6 +299,7 @@ begin
  md"""😸"""
 end
 
+
 # ╔═╡ 00000000-0000-0000-0000-000000000001
 PLUTO_PROJECT_TOML_CONTENTS = """
 [deps]
@@ -381,9 +382,9 @@ version = "1.0.0"
 
 [[deps.ClimateModels]]
 deps = ["CSV", "DataFrames", "Dates", "Downloads", "Git", "NetCDF", "OrderedCollections", "Pkg", "Statistics", "Suppressor", "TOML", "Test", "UUIDs"]
-git-tree-sha1 = "81a64dad5c7e72992fcd4af4d14b1496bab5247b"
+git-tree-sha1 = "0ac0160a052de566416d150ec9e9311a1f5ca569"
 uuid = "f6adb021-9183-4f40-84dc-8cea6f651bb0"
-version = "0.2.15"
+version = "0.2.20"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
@@ -393,9 +394,9 @@ version = "0.7.2"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
-git-tree-sha1 = "be6ab11021cd29f0344d5c4357b163af05a48cba"
+git-tree-sha1 = "d9a8f86737b665e15a9641ecbac64deef9ce6724"
 uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
-version = "3.21.0"
+version = "3.23.0"
 
 [[deps.ColorTypes]]
 deps = ["FixedPointNumbers", "Random"]
@@ -404,10 +405,16 @@ uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
 version = "0.11.4"
 
 [[deps.ColorVectorSpace]]
-deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"]
-git-tree-sha1 = "600cc5508d66b78aae350f7accdb58763ac18589"
+deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"]
+git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249"
 uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4"
-version = "0.9.10"
+version = "0.10.0"
+
+ [deps.ColorVectorSpace.extensions]
+ SpecialFunctionsExt = "SpecialFunctions"
+
+ [deps.ColorVectorSpace.weakdeps]
+ SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
 
 [[deps.Colors]]
 deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
@@ -417,9 +424,9 @@ version = "0.12.10"
 
 [[deps.Compat]]
 deps = ["UUIDs"]
-git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d"
+git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.7.0"
+version = "4.9.0"
 weakdeps = ["Dates", "LinearAlgebra"]
 
  [deps.Compat.extensions]
@@ -452,16 +459,16 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
 version = "1.15.0"
 
 [[deps.DataFrames]]
-deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
-git-tree-sha1 = "089d29c0fc00a190661517e4f3cba5dcb3fd0c08"
+deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
+git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8"
 uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-version = "1.6.0"
+version = "1.6.1"
 
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "cf25ccb972fec4e4817764d01c82386ae94f77b4"
+git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.18.14"
+version = "0.18.15"
 
 [[deps.DataValueInterfaces]]
 git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
@@ -480,15 +487,19 @@ version = "1.9.1"
 
 [[deps.DiskArrays]]
 deps = ["OffsetArrays"]
-git-tree-sha1 = "52253d45971d96d24c33e0cf89bba41c127ee3b9"
+git-tree-sha1 = "7e8dcba9d1d1ba8aa576f7d899d42e04d76431b2"
 uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3"
-version = "0.3.14"
+version = "0.3.15"
 
 [[deps.Distances]]
-deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2"
+deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
+git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9"
 uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-version = "0.10.8"
+version = "0.10.9"
+weakdeps = ["SparseArrays"]
+
+ [deps.Distances.extensions]
+ DistancesSparseArraysExt = "SparseArrays"
 
 [[deps.DocStringExtensions]]
 deps = ["LibGit2"]
@@ -586,10 +597,10 @@ uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
 version = "0.72.9"
 
 [[deps.GR_jll]]
-deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"]
-git-tree-sha1 = "f61f768bf090d97c532d24b64e07b237e9bb7b6b"
+deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"]
+git-tree-sha1 = "1596bab77f4f073a14c62424283e7ebff3072eca"
 uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
-version = "0.72.9+0"
+version = "0.72.9+1"
 
 [[deps.Gettext_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
@@ -694,10 +705,10 @@ uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
 version = "0.1.5"
 
 [[deps.JLLWrappers]]
-deps = ["Preferences"]
-git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1"
+deps = ["Artifacts", "Preferences"]
+git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.4.1"
+version = "1.5.0"
 
 [[deps.JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
@@ -834,9 +845,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[deps.LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f"
+git-tree-sha1 = "5ab83e1679320064c29e8973034357655743d22d"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.24"
+version = "0.3.25"
 
  [deps.LogExpFunctions.extensions]
  LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
@@ -896,9 +907,9 @@ version = "0.3.2"
 
 [[deps.MeshArrays]]
 deps = ["CatViews", "Dates", "LazyArtifacts", "NearestNeighbors", "Pkg", "Printf", "SparseArrays", "Statistics", "Unitful"]
-git-tree-sha1 = "8aa22a1e308edf2d6120871c67c2b1bde8b695cf"
+git-tree-sha1 = "a70763dc0dae3b7ce8c13ad63e4f22ebfbc30f19"
 uuid = "cb8c808f-1acf-59a3-9d2b-6e38d009f683"
-version = "0.2.37"
+version = "0.2.38"
 
 [[deps.Missings]]
 deps = ["DataAPI"]
@@ -971,15 +982,9 @@ version = "1.4.1"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "1aa4b74f80b01c6bc2b89992b861b5f210e665b5"
+git-tree-sha1 = "bbb5c2115d63c2f1451cb70e5ef75e8fe4707019"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "1.1.21+0"
-
-[[deps.OpenSpecFun_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
-uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
-version = "0.5.5+0"
+version = "1.1.22+0"
 
 [[deps.Opus_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -988,9 +993,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372"
 version = "1.3.2+0"
 
 [[deps.OrderedCollections]]
-git-tree-sha1 = "d321bf2de576bf25ec4d3e4360faca399afca282"
+git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.6.0"
+version = "1.6.2"
 
 [[deps.PCRE2_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -999,9 +1004,9 @@ version = "10.42.0+0"
 
 [[deps.Parsers]]
 deps = ["Dates", "PrecompileTools", "UUIDs"]
-git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29"
+git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.7.1"
+version = "2.7.2"
 
 [[deps.Pipe]]
 git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d"
@@ -1033,9 +1038,9 @@ version = "1.3.5"
 
 [[deps.Plots]]
 deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
-git-tree-sha1 = "75ca67b2c6512ad2d0c767a7cfc55e75075f8bbc"
+git-tree-sha1 = "9f8675a55b37a70aa23177ec110f6e3f4dd68466"
 uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
-version = "1.38.16"
+version = "1.38.17"
 
  [deps.Plots.extensions]
  FileIOExt = "FileIO"
@@ -1076,10 +1081,10 @@ uuid = "21216c6a-2e73-6563-6e65-726566657250"
 version = "1.4.0"
 
 [[deps.PrettyTables]]
-deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"]
-git-tree-sha1 = "331cc8048cba270591eab381e7aa3e2e3fef7f5e"
+deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"]
+git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a"
 uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
-version = "2.2.5"
+version = "2.2.7"
 
 [[deps.Printf]]
 deps = ["Unicode"]
@@ -1171,18 +1176,6 @@ version = "1.1.1"
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
 uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
-[[deps.SpecialFunctions]]
-deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
-git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3"
-uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "2.3.0"
-
- [deps.SpecialFunctions.extensions]
- SpecialFunctionsChainRulesCoreExt = "ChainRulesCore"
-
- [deps.SpecialFunctions.weakdeps]
- ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-
 [[deps.StaticArrays]]
 deps = ["LinearAlgebra", "Random", "StaticArraysCore"]
 git-tree-sha1 = "9cabadf6e7cd2349b6cf49f1915ad2028d65e881"
@@ -1275,9 +1268,9 @@ uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775"
 version = "0.1.7"
 
 [[deps.URIs]]
-git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a"
+git-tree-sha1 = "b7a5e99f24892b6824a954199a45e9ffcc1c70f0"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.4.2"
+version = "1.5.0"
 
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
@@ -1294,9 +1287,9 @@ version = "0.4.1"
 
 [[deps.Unitful]]
 deps = ["Dates", "LinearAlgebra", "Random"]
-git-tree-sha1 = "c4d2a349259c8eba66a00a540d550f122a3ab228"
+git-tree-sha1 = "607c142139151faa591b5e80d8055a15e487095b"
 uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
-version = "1.15.0"
+version = "1.16.3"
 
  [deps.Unitful.extensions]
  ConstructionBaseUnitfulExt = "ConstructionBase"
@@ -1354,9 +1347,9 @@ version = "1.1.34+0"
 
 [[deps.XZ_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "2222b751598bd9f4885c9ce9cd23e83404baa8ce"
+git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0"
 uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
-version = "5.4.3+1"
+version = "5.4.4+0"
 
 [[deps.Xorg_libX11_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]