Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf#16795

Merged

mvdbeek merged 18 commits intogalaxyproject:devfrom sveinugu:it_inject_entry_point_path

Nov 16, 2023

+664-175

Commits on Nov 15, 2023

Initial implementation of entry_point_path inject
sveinugu
committed
Updated JupyTool, Open Refine, Guacamole Desktop, and RStudio tools to potentially support path-based proxy
sveinugu
committed
Added 'label', 'requires_path_in_url' and 'requires_path_in_header' columns to 'interactivetool_entry_point' table and as attribute to entry points
sveinugu
committed
Using label instead of name to identify entrypoint
sveinugu
committed
Added "requires_path_in_url" and "requires_path_in_header" attributes to entry points for tools. Sendoff to gx-it-proxy. Cleanup
sveinugu
committed
Shortened all interactive tool URLs incl encoded ids of entry points
sveinugu
committed
Removed "interactivetools_shorten_url"
sveinugu
committed
Updated config sample files and interactive tools documentation
sveinugu
committed
Removed info about default pools value as this is currently incorrect. Have also wasted time earlier due to this
sveinugu
committed
Added simple job_conf.yml files for interactive tools, including config for Podman
sveinugu
committed
Added note about lack of support for data_dir resolution of "interactivetools_map" config in gx-it-proxy and gravity
sveinugu
committed
Fixed linting, import sorting and unrelated mypy error (due to deprecated method)
sveinugu
committed
Update gravity requirement to 1.0.4, waiting for required gravity + gx-it-proxy updates
sveinugu
committed
Cleanup/refactor of URL construction in InteractiveToolManager (as requested in https://github.com/galaxyproject/galaxy/pull/15147/files/906b309151a45b2c2f4fa8f7a64452518f2e8367#r1043548111 )
sveinugu
committed
Lint fix
sveinugu
committed
Less secluded docker containers

sveinugu
and
mvdbeek
authored
Revert removal of docs for default pools argument
sveinugu
committed
Added note on the removal of interactivetools_shorten_url
sveinugu
committed

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Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf#16795

Commits on Nov 15, 2023

Initial implementation of entry_point_path inject

Updated JupyTool, Open Refine, Guacamole Desktop, and RStudio tools to potentially support path-based proxy

Added 'label', 'requires_path_in_url' and 'requires_path_in_header' columns to 'interactivetool_entry_point' table and as attribute to entry points

Using label instead of name to identify entrypoint

Added "requires_path_in_url" and "requires_path_in_header" attributes to entry points for tools. Sendoff to gx-it-proxy. Cleanup

Shortened all interactive tool URLs incl encoded ids of entry points

Removed "interactivetools_shorten_url"

Updated config sample files and interactive tools documentation

Removed info about default pools value as this is currently incorrect. Have also wasted time earlier due to this

Added simple job_conf.yml files for interactive tools, including config for Podman

Added note about lack of support for data_dir resolution of "interactivetools_map" config in gx-it-proxy and gravity

Fixed linting, import sorting and unrelated mypy error (due to deprecated method)

Update gravity requirement to 1.0.4, waiting for required gravity + gx-it-proxy updates

Cleanup/refactor of URL construction in InteractiveToolManager (as requested in https://github.com/galaxyproject/galaxy/pull/15147/files/906b309151a45b2c2f4fa8f7a64452518f2e8367#r1043548111 )

Lint fix

Less secluded docker containers

Revert removal of docs for default pools argument

Added note on the removal of interactivetools_shorten_url