New Sources added

HESS_J1825/Index_vs_flux.txt

@@ -0,0 +1,54 @@
+# %ECSV 0.9
+# --- 
+# datatype:
+# - {name: boxid, datatype: string, format: '%.2f'}
+# - {name: dist_deg, unit: deg, datatype: float32, format: '%.2f'}
+# - {name: dist_pc, unit: pc, datatype: float32, format: '%.2f'}
+# - {name: gamma, datatype: float32, format: '%.2f'}
+# - {name: gamma_stat, datatype: float32, format: '%.2f'}
+# - {name: gamma_sys, datatype: float32, format: '%.2f'}
+# - {name: dnde_1_5, unit: 1 / (cm2 TeV s), datatype: float32, format: '%2.4g'}
+# - {name: dnde_1_5_stat_err, unit: 1 / (cm2 TeV s), datatype: float32, format: '%2.4g'}
+# - {name: dnde_1_5_sys_err, unit: 1 / (cm2 TeV s), datatype: float32, format: '%2.4g'}
+# - {name: sigma, datatype: float32, format: '%2.4g'}
+# meta: !!omap
+# schema: astropy-2.0
+#boxid dist_deg dist_pc gamma gamma_stat gamma_sys dnde_1_5 dnde_1_5_stat_err dnde_1_5_sys_err sigma
+1  0.74 51  2.32  0.05  0.03  4.3e-13  0.2e-13  0.2e-13  28.8 
+2  0.58 41  2.21  0.04  0.03  5.9e-13  0.2e-13  0.3e-13  34.2
+3  0.52 36  2.24  0.06  0.03  4.3e-13  0.2e-13  0.2e-13  24.6
+4  0.58 41  2.29  0.04  0.03  6.0e-13  0.2e-13  0.2e-13  38.8
+5  0.36 26  2.13  0.03  0.03  9.6e-13  0.3e-13  0.4e-13  51.4
+6  0.26 18  2.09  0.04  0.02  6.9e-13  0.3e-13  0.3e-13  35.05
+7  0.52 36  2.20  0.04  0.02  5.4e-13  0.2e-13  0.2e-13  33.7
+8  0.26 18  2.06  0.03  0.01  10.4e-13  0.3e-13  0.3e-13  53.6 
+9  0. 0  2.00  0.03  0.02  8.7e-13  0.3e-13  0.3e-13  41.6
+10  0.58 41  2.29  0.07  0.05  2.9e-13  0.2e-13  0.2e-13  20.7
+11  0.37 26  2.20  0.05  0.03  4.3e-13  0.2e-13  0.1e-13  26.4
+12  0.26 18  2.06  0.06  0.04  4.0e-13  0.2e-13  0.2e-13  20.5
+a  1.52 106  3.3  0.2  0.2  0.5e-13  0.1e-13  0.01e-13  8.8
+b  1.40 98  3.2  0.2  0.8  0.6e-13  0.2e-13  0.4e-13  6.9 
+c  1.33 93  3.3  0.3  0.3  0.5e-13  0.2e-13  0.3e-13  6.9 
+d  1.47 103  3.1  0.3  0.4  0.5e-13  0.2e-13  0.01e-13  6.2
+e  1.3 91  2.90  0.13  0.05  1.2e-13  0.2e-13  0.1e-13  12.8
+f  1.16 81  2.8  0.1  0.1  1.3e-13  0.2e-13  0.2e-13  13.3 
+g  1.07 75  2.7  0.1  0.1  1.3e-13  0.2e-13  0.2e-13  11.1 
+h  1.04 73  2.9  0.2  0.1  0.8e-13  0.2e-13  0.1e-13  8.2
+i  1.3 91  3.1  0.2  0.1  0.7e-13  0.2e-13  0.2e-13  9.4
+j  1.10 77  2.61  0.09  0.07  2.1e-13  0.2e-13  0.2e-13  17.7
+k  0.94 65  2.43  0.07  0.04  2.8e-13  0.2e-13  0.1e-13  20.4
+l  0.82 57  2.40  0.07  0.03  3.1e-13  0.2e-13  0.2e-13  21.0
+m  0.78 56  2.40  0.10  0.05  2.2e-13  0.2e-13  0.1e-13  14.5
+n  0.82 57  2.45  0.15  0.3  1.3e-13  0.2e-13  0.1e-13  8.7
+o  1.40 98  2.8  0.2  0.1  0.9e-13  0.2e-13  0.1e-13  9.7 
+p  1.16 81  2.72  0.11  0.09  1.6e-13  0.2e-13  0.2e-13  15.1
+q  0.94 65  2.33  0.07  0.02  3.0e-13  0.2e-13  0.2e-13  21.2
+r  0.58 41  2.59  0.1  0.03  1.9e-13  0.2e-13  0.2e-13  13.8 
+s  1.07 75  2.8  0.1  0.1  1.1e-13  0.2e-13  0.2e-13  13.7
+t  0.82 57  2.3  0.07  0.02  3.2e-13  0.2e-13 0.2e-13  22.4 
+u  0.78 56  2.28  0.08  0.07  2.6e-13  0.2e-13  0.3e-13  19.2
+v  0.82 57  2.47  0.13  0.06  1.4e-13  0.2e-13  0.1e-13  12.4
+w  0.94 65  2.45  0.16  0.1  1.3e-13  0.2e-13  0.2e-13  10.7 
+x  0.74 51  2.71  0.16  0.2  1.0e-13  0.2e-13  0.2e-13  10.6 
+y  0.58 41  2.5  0.2  0.1  1.2e-13  0.2e-13  0.1e-13  9.8 
+z  0.52 36  2.6  0.2  0.09  1.0e-13  0.2e-13  0.1e-13  8.1

HESS_J1825/MAP_CREATOR.py

@@ -0,0 +1,154 @@
+from gammapy.maps import Map, MapAxis
+from astropy.coordinates import SkyCoord
+#from gammapy.spectrum.models import PowerLaw,PowerLaw2,ExponentialCutoffPowerLaw
+import numpy as np
+from astropy import units as u
+from astropy.io import fits
+import matplotlib.pyplot as plt
+from scipy import interpolate
+from gammapy.maps import Map, WcsGeom, WcsNDMap
+from gammapy.modeling.models import DiskSpatialModel, PointSpatialModel, ExpCutoffPowerLawSpectralModel
+import gammalib
+
+#######
+def pow(x,N,indice,eref):
+    return N*(x/eref)**(-1.*indice)
+
+def expcutoff(x,N,indice,ecut,eref):
+    return N*(x/eref)**(-1.*indice) * np.exp(-1.0*x/ecut)
+########
+
+### read the file with the spatial extent
+rad = np.genfromtxt('radial_extent.txt')
+energy = rad[:,0]*1e6
+dist = rad[:,1] * 1.357 #the factor 1.357 relates the radius at 1/e with the radius at 90% (0.9/(1/e)**1/3)
+
+rad_interpolate = interpolate.interp1d(energy, dist, fill_value="extrapolate")
+
+### read the file with the spectral parameters and estimate the normalization
+spec = np.genfromtxt('Index_vs_flux.txt')
+index = spec[:,3]
+e_index = spec[:,4]
+ang_dist = spec[:,1]
+flux_1_5TeV = spec[:,6]
+e_flux_1_5TeV = spec[:,7]
+
+### I've estimated a function to model the index and fluxes dependecies, based on Fig. 9 of HESS paper
+def fluxes(x):
+    a = 1.2 * 1.08686e-12
+    b = 0.0326925
+    c = 0.528341
+    return a * (x + 1)**b * np.exp(-1.0*x/c)
+
+def indexes(x):
+    a = 0.697262
+    b = 1.87344
+    return a*x+b
+
+# Define energy ranges and a cut-off
+emin=1e6 #TeV
+emax=5e6 #TeV
+E_ref = 1e6 #MeV
+Ecut = 19e6 # cutoff in MeV
+
+### interpolate the function of index, fluxes and normalizations
+d = np.linspace(0.0,1.55,100)
+
+### Position of the pulsar
+ra_0_psr = 276.554417
+dec_0_psr = -13.580028
+position_psr = SkyCoord(ra_0_psr, dec_0_psr, frame='icrs', unit='deg')
+
+### Position of the map center
+position = SkyCoord(276.4, -13.966667, frame='icrs', unit='deg')
+
+### Energy axes and size
+energy_axis = MapAxis.from_bounds(0.2e5, 250e6, 40, interp='log', name='energy', unit='MeV')
+
+enlarger = 1.2
+r_0 = rad_interpolate(energy_axis.center) * u.deg * enlarger
+r_0 = np.where(r_0>=0, r_0, 0) * u.deg
+
+### Fill the index and normalization at the positions of the pixels
+binsize=0.02
+eccentricity = 0.69
+ang = 45.
+width = 3.
+
+m_wcs = WcsGeom.create(binsz=binsize, coordsys="CEL",
+                       skydir=position_psr,
+                       width=width*u.deg,
+                       axes=[energy_axis])
+
+model = DiskSpatialModel(lon_0=ra_0_psr*u.deg, lat_0=dec_0_psr*u.deg, r_0="1.1 deg", e=eccentricity, phi=ang * u.deg, frame="icrs")
+
+coords = m_wcs.get_coord()
+coord_map = SkyCoord(coords.lon, coords.lat, frame='icrs')
+separation = position_psr.separation(coord_map)
+
+new_indexes = indexes(separation.value)
+
+N0 = (fluxes(separation.value) * (1-new_indexes) /
+      ((emax/E_ref)**(1-new_indexes) - (emin/E_ref)**(1-new_indexes))) / (0.26 * np.pi / 180.)**2
+
+### Create the map
+skymap = Map.create(width=width*u.deg, axes=[energy_axis],
+                    binsz=binsize, coordsys="CEL",
+                    skydir=position_psr)
+
+for idx, energy in enumerate(energy_axis.center):
+
+    if r_0[idx] > 0:
+        model = DiskSpatialModel(lon_0=ra_0_psr*u.deg, lat_0=dec_0_psr*u.deg,
+                                 r_0=r_0[idx],
+                                 e=eccentricity,
+                                 phi=ang * u.deg,
+                                 frame="icrs")
+    else:
+        model = PointSpatialModel(lon_0=ra_0_psr*u.deg, lat_0=dec_0_psr*u.deg,
+                                  frame='icrs')
+
+    skymap.data[idx] = model.evaluate_geom(skymap.geom.to_image())
+
+skymap.data = np.where(skymap.data>0,1.,0)
+
+### Fill the map with the flux values
+for j in np.arange(len(energy_axis.edges)-1):
+        flx = (expcutoff((energy_axis.edges.value[j]/1e6),N0[j],new_indexes[j],Ecut/1e6,E_ref/1e6)
+               * (energy_axis.edges.value[j+1]-energy_axis.edges.value[j])/1e6)
+
+        flx = flx / (energy_axis.edges.value[j+1]-energy_axis.edges.value[j])
+        skymap.data[j] *= flx
+
+### Cut the ellipse in order to get an asymettric shape
+for j in np.arange(len(energy_axis.edges)-1):
+    for idx1 in np.arange(0,int(width/binsize)):
+            for idx2 in (np.arange(0,int(width/binsize))[::-1]):
+                if (idx2+1.0)/(idx1+1.0) < (np.tan((125-ang)*np.pi/180.) - 7/binsize/(idx1+1.0)): #+ 80/idx1+1.0:
+                    skymap.data[j,idx1,idx2] *= 0
+                else:
+                    continue
+
+### Smooth the map
+skymap = skymap.smooth(width=0.08 * u.deg, kernel="gauss")
+
+### Save the map
+skymap.write('hessj1825_cube.fits', hdu='Primary', overwrite='True')
+
+hdul = fits.open('hessj1825_cube.fits')
+hdul[0].header.set('BUNIT', 'photon/cm2/s/MeV/sr', 'Photon flux')
+hdul[0].verify('fix')
+hdul[1].name='ENERGIES'
+hdul[1].header['TTYPE2']='Energy'
+hdul[1].verify('fix')
+hdul.writeto('hessj1825_map.fits',overwrite=True)
+
+### create gammalib model
+spatial = gammalib.GModelSpatialDiffuseCube(gammalib.GFilename('hessj1825_map.fits'))
+spectral = gammalib.GModelSpectralConst(1.)
+model = gammalib.GModelSky(spatial,spectral)
+## fill to model container and write to disk
+models = gammalib.GModels()
+models.append(model)
+models.save('hessj1825.xml')
+

HESS_J1825/hessj1825.xml

@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<source_library title="source library">
+  <source name="" type="DiffuseSource">
+    <spectrum type="Constant">
+      <parameter name="Normalization" value="1" error="0" scale="1" min="0" max="1000" free="1" />
+    </spectrum>
+    <spatialModel type="DiffuseMapCube" file="hessj1825_map.fits">
+      <parameter name="Normalization" value="1" scale="1" min="0.001" max="1000" free="0" />
+    </spatialModel>
+  </source>
+</source_library>

HESS_J1825/radial_extent.txt

@@ -0,0 +1,9 @@
+0.15176073466832585 0.6770880692315371
+0.406158598837698 0.778267746075181
+0.8463231720621138 0.7360977391991531
+1.6774040264261578 0.6524032698070652
+3.4952501326754755 0.47579443140094124
+6.700187503509583 0.3915091671561024
+12.84386263589743 0.27005462091056004
+25.88472040318299 0.19694948009891955
+47.99095809323868 0.1449740670372633

gammapy-0.10-environment.yml

@@ -0,0 +1,31 @@
+# Conda environment for Gammapy version 0.10
+# Install:    conda env create -f gammapy-0.10-environment.yml
+# Activate:   conda activate gammapy-0.10
+# Deactivate: conda deactivate
+
+name: gammapy-0.10
+
+channels:
+  - conda-forge
+  - sherpa
+
+dependencies:
+  - gammapy=0.10
+  - python=3.6
+  - ipython=7.2
+  - jupyter=1.0
+  - jupyterlab=0.35
+  - pyyaml=3.13
+  - click=7.0
+  - numpy=1.16
+  - scipy=1.2
+  - pandas=0.24
+  - matplotlib>=2,<3
+  - astropy=3.1
+  - regions=0.3
+  - reproject=0.4
+  - uncertainties=3.0
+  - iminuit=1.3
+  - sherpa=4.10
+  - healpy=1.11
+  - naima=0.8

input/data/2009/2009ApJ...703L...6A/info.yaml

@@ -7,5 +7,5 @@ datasets:
   - tev-000149-sed.ecsv
 
 data_entry:
-  status: complete
+  status: uncomplete
   reviewed: no

input/data/2011/2011arXiv1110.6368B/info.yaml

@@ -0,0 +1,10 @@
+reference_id: 2011arXiv1110.6368B
+source_id: [139]
+telescope: [magic]
+
+datasets:
+  - tev-000139.yaml
+
+data_entry:
+  status: uncomplete
+  reviewed: no

input/data/2011/2011arXiv1110.6368B/tev-000139.yaml

@@ -0,0 +1,15 @@
+source_id: 139
+reference_id: 2011arXiv1110.6368B
+telescope: magic
+
+data:
+  livetime: 1.5h
+  significance: 7.6
+
+pos:
+  ra: {val: 20h01m13.5s}
+  dec: {val: 43d53m02.8s}
+
+morph:
+   type: point
+

input/data/2015/2015MNRAS.446..217A/info.yaml

@@ -6,5 +6,5 @@ datasets:
   - tev-000005.yaml
 
 data_entry:
-  status: missing
+  status: uncomplete
   reviewed: no

input/data/2015/2015MNRAS.446..217A/tev-000005.yaml

@@ -1,5 +1,23 @@
 source_id: 5
-reference_id:  2015MNRAS.446..217A
+reference_id: 2015MNRAS.446..217A
 telescope: magic
 
-#TODO: Add data
+data:
+  livetime: 19.7h
+  significance: 5.5
+
+pos:
+  ra: {val: 00h35m16.8s, err: 0h0m7.2s}
+  dec: {val: +59d47m24.0s, err: 0h1m12.0s}
+
+morph:
+   type: point
+
+spec:
+  model:
+    type: pl
+    parameters:
+      norm: {val: 2.0, err: 0.50, err_sys: 0.50, scale: 1e-11, unit: cm-2 s-1 TeV-1}
+      index: {val: 3.8, err: 0.7, err_sys: 0.3}
+      e_ref: {val: 0.25, unit: TeV}
+    erange: {min: 0.125, max: 0.5, unit: TeV}

input/data/2018/2018A&A...612A...1H/info.yaml

@@ -0,0 +1,18 @@
+reference_id: 2018A&A...612A...1H
+source_id: [50,122,127,129,160,162,163,164,170]
+telescope: [hess]
+
+datasets:
+    - tev-000050.yaml
+    - tev-000122.yaml
+    - tev-000127.yaml
+    - tev-000129.yaml
+    - tev-000160.yaml
+    - tev-000162.yaml
+    - tev-000163.yaml
+    - tev-000164.yaml
+    - tev-000170.yaml
+
+data_entry:
+  status: uncomplete
+  reviewed: no

input/data/2018/2018A&A...612A...1H/tev-000050.yaml

@@ -0,0 +1,24 @@
+source_id: 50
+reference_id: 2018A&A...612A...1H
+telescope: hess
+
+data:
+  livetime: 51.7h
+  significance: 10.2
+
+pos:
+  ra: {val: 11h19m04.03s}
+  dec: {val: -61d27m07.8s}
+
+morph:
+  type: gauss
+  sigma: {val: 5.9m, err: 0.9m}
+
+spec:
+  model:
+    type: pl
+    parameters:
+      norm: {val: 7.96, err: 0.75, err_sys: 0.0, scale: 1e-13, unit: cm-2 s-1 TeV-1}
+      index: {val: 2.64, err: 0.12, err_sys: 0.2}
+      e_ref: {val: 1.27, unit: TeV}
+    erange: {min: 0.42, max: 68.13, unit: TeV}