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gauravcodepro/README.md

Metrics

Professional Aptitude

  • I read scientific aptitude to increase my work potential for continous development:
  • I think very precisely before speaking as what has spoken cant be fetched back.
  • Pro-active in making effective communication as communication leads to result oriented approaches.
  • Bring your skills to the work and show them as that will raise your value.
  • I raise my value and respect those who respect my skills and value.
  • Effectively work with those, who talk to you and not other way around. Indirect approaches never generate results.
  • Extremely collaborative and open to supporting those who support me.

Bioinformatics

  • Plant, bacterial and fungal genomes, transcriptomes, organelle, metagenomics and phylogenomics.
  • Illumina, PacBio, Oxford Nanopore, PacBioHifi, HiC
  • Data Analysis Programming specifics: Python, R, Ruby, MATLAB, Julia
  • Web Development Programming specifics: Python, Javascript, Ruby on Rails, Django, HTML and CSS.
  • Server Management and Command Line Data Management: Awk, Shell, Nextflow
  • Database Management Specifics: SQlite3, MySQL, MongoDB.
  • Documentation Programming specifics: Markdown, ReadTheDocs, MkDocs, Jekyll, Github Pages

Deep Learning, RAG, Language Models and Graphs.

  • PyTorch, Tensorflow, CatBoost, XGBoost, Sklearn, Keras, LightGBM, fastai and others.
  • Data Analysis Programming specifics: Python, R, MATLAB, Julia
  • Web Development Programming specifics: Python, Javascript, Ruby on Rails, Django, HTML and CSS, Julia
  • Database Management Specifics: SQlite3, MySQL, MongoDB.
  • Documentation Programming specifics: Markdown, ReadTheDocs, MkDocs, Jekyll, Github Pages

DevOPs

  • Git,GitKraken,Docker,Kubernetes,Terraform for code management and container orchestration.
  • Programming specifics: Shell, NuShell, Awk, Python
  • PBS and SLURM as job scheduler
  • Heroku and Docker for application deployment
  • Database Management Specifics: SQlite3, MySQL, MongoDB.
  • Documentation Programming specifics: Markdown, ReadTheDocs, MkDocs, Jekyll, Github Pages

Web Develpoment

  • Programming specifics: Ruby on Rails, Streamlit, Python Shiny and ShinyExpress, Django, BootStrap, Julia, HTML, Javascript
  • Format: jinja and jinja2, jq, yq
  • Database Management Specifics: MySQL, MongoDB.
  • Documentation Programming specifics: Markdown, ReadTheDocs, MkDocs, Jekyll, Github Pages

Streamlit: Streamlit Applications and Streamlit Community

Name Application
Pacbiohifi: pacbiohifi sequencing information Pacbiohifi
Univeristat-Potsdam: web application for Universitat Potsdam slurm-applicator
Ontology-graphs: analyzing arabidopsis ontologies and plant obo ontology-graphs
Metabolic-json: analyzing BIGG metabolic models metabolic-app
Metabolic-analyzer:API to BIGG database models metabolic-analyzer

Ruby Gems: Ruby gems, Ruby app and Ruby Community: released and development version

Name Gem Release
Devopsutils: devops system configuration devops_system_profiler
Ruby-template: ruby templating ruby template creator
Fasta-tokenizer: fasta tokenizer and motif indexer fasta_tokenizer
Panacheextract: snp extractor panacheextract
Fluxmodels: flux models fluxmodels
Protalign: protein alignment analyzer protein-alignment-gem and proteinmultialign
Pacbiohifi-analyzer: pacbio hifi data from reads to graphs pacbiohifi-analyzer

Python Package: Python Packages and Python Community: building development release version

Name Python Package Repo
Tairaccession: python package for interacting with tair tairaccession
Graphanalyzer: python package for graph alignment tools graphanalyzer
RNAprocessor: python package for sequence based machine learning rnaprocessor
ProteinAnnotator: python package for genome-protein alignments protein-annotator
Ontologyanalyzer: python package ontologies using the semantic web ontologyanalyzer

Pinned Loading

  1. python-algorithms-datastructures python-algorithms-datastructures Public

    python datastructure and algorithms

    Python 1

  2. pangraphs-genome-assembly pangraphs-genome-assembly Public

    genome assembly to pangraphs from illumina to long reads.

    Shell 2

  3. domain-directed-graphs domain-directed-graphs Public

    interpro to graphs for analyzing domains.

    Python

  4. pacbiohifi-analyzer pacbiohifi-analyzer Public

    a pacbiohifi analyzer for pacbiohifi reads from sequence analysis to the graph alignments.

    JavaScript

  5. domain-analyzer domain-analyzer Public

    interpro domain analyzer

    Python

  6. streamlit-BIGG-metabolic-analyzer-API streamlit-BIGG-metabolic-analyzer-API Public

    streamlit application to analyze the BIGG Metabolic models.

    Python