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@gencorefacility

gencorefacility

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  1. variant-calling-pipeline-gatk4 variant-calling-pipeline-gatk4 Public

    Variant Calling Pipeline Using GATK4 and Nextflow

    Nextflow 53 46

  2. MAD MAD Public

    Minor Allele Detection Pipeline for SARS-CoV2

    Python 1 1

  3. reform reform Public

    Modify existing reference fasta and gff3/gtf files to include a new sequence

    Python 30 5

  4. r-notebooks r-notebooks Public

    Gene Set Enrichment Analysis and Over Representation Analysis analysis using R

    18 25

  5. covid19 covid19 Public

    Variant Analysis Pipeline for COVID19

    Nextflow 4 1

Repositories

Showing 10 of 16 repositories
  • reformWeb Public

    Flask WebUI for reform

    gencorefacility/reformWeb’s past year of commit activity
    Python 0 2 0 4 Updated Dec 2, 2024
  • reform Public

    Modify existing reference fasta and gff3/gtf files to include a new sequence

    gencorefacility/reform’s past year of commit activity
    Python 30 5 1 1 Updated Nov 18, 2024
  • GENEFLOW Public

    Genomic Examination and Nucleotide Evaluation For Laboratory Operations Workflow

    gencorefacility/GENEFLOW’s past year of commit activity
    Python 0 1 4 2 Updated Jul 30, 2024
  • hpc-gatk4 Public
    gencorefacility/hpc-gatk4’s past year of commit activity
    Nextflow 0 0 1 0 Updated Jul 13, 2023
  • variant-calling-pipeline-gatk4 Public

    Variant Calling Pipeline Using GATK4 and Nextflow

    gencorefacility/variant-calling-pipeline-gatk4’s past year of commit activity
    Nextflow 53 46 1 1 Updated Feb 16, 2023
  • MAD2 Public
    gencorefacility/MAD2’s past year of commit activity
    Python 0 0 0 0 Updated Jul 27, 2022
  • django-shibboleth-remoteuser Public Forked from Brown-University-Library/django-shibboleth-remoteuser

    Middleware for using Shibboleth with Django

    gencorefacility/django-shibboleth-remoteuser’s past year of commit activity
    Python 0 MIT 75 0 0 Updated Jun 28, 2022
  • MAD Public

    Minor Allele Detection Pipeline for SARS-CoV2

    gencorefacility/MAD’s past year of commit activity
    Python 1 1 0 0 Updated Jul 15, 2021
  • covid19 Public

    Variant Analysis Pipeline for COVID19

    gencorefacility/covid19’s past year of commit activity
    Nextflow 4 1 0 0 Updated Apr 30, 2021
  • ReSeq Public Forked from schmeing/ReSeq

    More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original

    gencorefacility/ReSeq’s past year of commit activity
    C++ 0 MIT 3 0 0 Updated Feb 13, 2021
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