Merge pull request #29388 from geneontology/issue-28506

Obsoleted 10 terms; #28506

src/ontology/go-edit.obo

@@ -132665,21 +132665,23 @@ is_a: GO:0043687 ! post-translational protein modification
 
 [Term]
 id: GO:0018411
-name: protein glucuronidation
+name: obsolete protein glucuronidation
 namespace: biological_process
-def: "The modification of a protein by amino acid glucuronidation." [GOC:ai]
-subset: gocheck_obsoletion_candidate
+def: "OBSOLETE. The modification of a protein by amino acid glucuronidation." [GOC:ai]
+comment: The reason for obsoletion is that the term represents a molecular function.
 synonym: "protein amino acid glucuronidation" EXACT [GOC:bf]
-is_a: GO:0036211 ! protein modification process
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 
 [Term]
 id: GO:0018412
-name: protein O-glucuronidation
+name: obsolete protein O-glucuronidation
 namespace: biological_process
-def: "The modification of a protein by glucuronidation on an amino acid oxygen atom." [GOC:mah]
-subset: gocheck_obsoletion_candidate
+def: "OBSOLETE. The modification of a protein by glucuronidation on an amino acid oxygen atom." [GOC:mah]
+comment: The reason for obsoletion is that the term represents a molecular function.
 synonym: "protein amino acid O-glucuronidation" EXACT [GOC:bf]
-is_a: GO:0018411 ! protein glucuronidation
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 
 [Term]
 id: GO:0018413
@@ -223588,28 +223590,34 @@ creation_date: 2012-05-11T10:57:48Z
 
 [Term]
 id: GO:0036234
-name: deglucuronidation
+name: obsolete deglucuronidation
 namespace: biological_process
-def: "The removal of glucuronic acid from a conjugated substrate." [GOC:BHF, GOC:vk, PMID:22294686, PMID:8560473]
-is_a: GO:0019585 ! glucuronate metabolic process
+def: "OBSOLETE. The removal of glucuronic acid from a conjugated substrate." [GOC:BHF, GOC:vk, PMID:22294686, PMID:8560473]
+comment: The reason for obsoletion is that the term represents a molecular function.
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 created_by: bf
 creation_date: 2012-05-18T04:23:04Z
 
 [Term]
 id: GO:0036235
-name: acyl deglucuronidation
+name: obsolete acyl deglucuronidation
 namespace: biological_process
-def: "The removal of glucuronic acid from an acyl-glucuronide." [GOC:BHF, GOC:vk, PMID:22294686]
-is_a: GO:0036234 ! deglucuronidation
+def: "OBSOLETE. The removal of glucuronic acid from an acyl-glucuronide." [GOC:BHF, GOC:vk, PMID:22294686]
+comment: The reason for obsoletion is that the term represents a molecular function.
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 created_by: bf
 creation_date: 2012-05-18T04:24:11Z
 
 [Term]
 id: GO:0036236
-name: acyl glucuronidation
+name: obsolete acyl glucuronidation
 namespace: biological_process
-def: "The modification of an substrate by the conjugation of glucuronic acid to form an acyl-glucuronide (also called an acyl-glucuronoside)." [GOC:BHF, GOC:vk, PMID:12485951, PMID:22294686]
-is_a: GO:0052695 ! cellular glucuronidation
+def: "OBSOLETE. The modification of an substrate by the conjugation of glucuronic acid to form an acyl-glucuronide (also called an acyl-glucuronoside)." [GOC:BHF, GOC:vk, PMID:12485951, PMID:22294686]
+comment: The reason for obsoletion is that the term represents a molecular function.
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 created_by: bf
 creation_date: 2012-05-18T04:26:25Z
 
@@ -337911,14 +337919,16 @@ is_a: GO:0004497 ! monooxygenase activity
 
 [Term]
 id: GO:0052695
-name: cellular glucuronidation
+name: obsolete cellular glucuronidation
 namespace: biological_process
-def: "The modification of an organic chemical by the conjugation of glucuronic acid. The substances resulting from glucuronidation are known as glucuronosides (or glucuronides) and are often much more water-soluble than the non-glucuronic acid-containing precursor." [GOC:BHF]
+def: "OBSOLETE. The modification of an organic chemical by the conjugation of glucuronic acid. The substances resulting from glucuronidation are known as glucuronosides (or glucuronides) and are often much more water-soluble than the non-glucuronic acid-containing precursor." [GOC:BHF]
+comment: The reason for obsoletion is that the term represents a molecular function.
 synonym: "cellular glucuronide biosynthesis" EXACT []
 synonym: "cellular glucuronide biosynthetic process" EXACT []
 synonym: "cellular glucuronoside biosynthesis" EXACT []
 synonym: "cellular glucuronoside biosynthetic process" EXACT []
-is_a: GO:0019585 ! glucuronate metabolic process
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 creation_date: 2011-07-27T05:28:18Z
 
 [Term]
@@ -337931,18 +337941,18 @@ synonym: "flavonoid glucuronide biosynthetic process" EXACT []
 synonym: "flavonoid glucuronoside biosynthesis" EXACT []
 synonym: "flavonoid glucuronoside biosynthetic process" EXACT []
 is_a: GO:0009812 ! flavonoid metabolic process
-is_a: GO:0052695 ! cellular glucuronidation
 created_by: ai
 creation_date: 2011-07-27T05:37:44Z
 
 [Term]
 id: GO:0052697
-name: xenobiotic glucuronidation
+name: obsolete xenobiotic glucuronidation
 namespace: biological_process
-def: "The modification of a xenobiotic substance by the conjugation of glucuronic acid. The resultant glucuronosides are often much more water-soluble than the xenobiotic precursor, enabling efficient excretion." [GOC:BHF, PMID:20056724]
+def: "OBSOLETE. The modification of a xenobiotic substance by the conjugation of glucuronic acid. The resultant glucuronosides are often much more water-soluble than the xenobiotic precursor, enabling efficient excretion." [GOC:BHF, PMID:20056724]
+comment: The reason for obsoletion is that the term represents a molecular function.
 synonym: "phase II metabolism" NARROW []
-is_a: GO:0006805 ! xenobiotic metabolic process
-is_a: GO:0052695 ! cellular glucuronidation
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 created_by: ai
 creation_date: 2011-07-27T05:37:50Z
 
@@ -597764,47 +597774,46 @@ creation_date: 2011-08-22T01:07:34Z
 
 [Term]
 id: GO:2001029
-name: regulation of cellular glucuronidation
+name: obsolete regulation of cellular glucuronidation
 namespace: biological_process
-def: "Any process that modulates the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
+def: "OBSOLETE. Any process that modulates the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
+comment: The reason for obsoletion is that the term represents a molecular function.
 synonym: "regulation of cellular glucuronide biosynthesis" EXACT [GOC:obol]
 synonym: "regulation of cellular glucuronide biosynthetic process" EXACT [GOC:obol]
 synonym: "regulation of cellular glucuronoside biosynthesis" EXACT [GOC:obol]
 synonym: "regulation of cellular glucuronoside biosynthetic process" EXACT [GOC:obol]
-is_a: GO:0006109 ! regulation of carbohydrate metabolic process
-is_a: GO:0010565 ! regulation of ketone metabolic process
-intersection_of: GO:0065007 ! biological regulation
-intersection_of: regulates GO:0052695 ! cellular glucuronidation
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 created_by: rl
 creation_date: 2011-08-22T01:10:52Z
 
 [Term]
 id: GO:2001030
-name: negative regulation of cellular glucuronidation
+name: obsolete negative regulation of cellular glucuronidation
 namespace: biological_process
-def: "Any process that stops, prevents or reduces the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
+def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
+comment: The reason for obsoletion is that the term represents a molecular function.
 synonym: "negative regulation of cellular glucuronide biosynthesis" EXACT [GOC:obol]
 synonym: "negative regulation of cellular glucuronide biosynthetic process" EXACT [GOC:obol]
 synonym: "negative regulation of cellular glucuronoside biosynthesis" EXACT [GOC:obol]
 synonym: "negative regulation of cellular glucuronoside biosynthetic process" EXACT [GOC:obol]
-is_a: GO:0045912 ! negative regulation of carbohydrate metabolic process
-intersection_of: GO:0065007 ! biological regulation
-intersection_of: negatively_regulates GO:0052695 ! cellular glucuronidation
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 created_by: rl
 creation_date: 2011-08-22T01:10:56Z
 
 [Term]
 id: GO:2001031
-name: positive regulation of cellular glucuronidation
+name: obsolete positive regulation of cellular glucuronidation
 namespace: biological_process
-def: "Any process that activates or increases the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
+def: "OBSOLETE. Any process that activates or increases the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
+comment: The reason for obsoletion is that the term represents a molecular function.
 synonym: "positive regulation of cellular glucuronide biosynthesis" EXACT [GOC:obol]
 synonym: "positive regulation of cellular glucuronide biosynthetic process" EXACT [GOC:obol]
 synonym: "positive regulation of cellular glucuronoside biosynthesis" EXACT [GOC:obol]
 synonym: "positive regulation of cellular glucuronoside biosynthetic process" EXACT [GOC:obol]
-is_a: GO:0045913 ! positive regulation of carbohydrate metabolic process
-intersection_of: GO:0065007 ! biological regulation
-intersection_of: positively_regulates GO:0052695 ! cellular glucuronidation
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
+is_obsolete: true
 created_by: rl
 creation_date: 2011-08-22T01:10:59Z