Merge pull request #28458 from geneontology/issue-28389-nopaline

Obsoleted 3 nopaline process terms; #28389

src/ontology/go-edit.obo

@@ -143760,15 +143760,15 @@ intersection_of: has_primary_input CHEBI:46912 ! ornithinium(1+)
 
 [Term]
 id: GO:0019468
-name: nopaline catabolic process
+name: obsolete nopaline catabolic process
 namespace: biological_process
-def: "The chemical reactions and pathways resulting in the breakdown of nopaline (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative." [GOC:jl, ISBN:0198506732]
+def: "OBSOLETE. The chemical reactions and pathways resulting in the breakdown of nopaline (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative." [GOC:jl, ISBN:0198506732]
+comment: The reason for obsoletion is that this term represents a molecular function.
 synonym: "nopaline breakdown" EXACT []
 synonym: "nopaline catabolism" EXACT []
 synonym: "nopaline degradation" EXACT []
-xref: MetaCyc:NOPALINEDEG-PWY
-intersection_of: GO:0009056 ! catabolic process
-intersection_of: has_primary_input CHEBI:58074 ! D-nopalinate(1-)
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28389" xsd:anyURI
+is_obsolete: true
 
 [Term]
 id: GO:0019469
@@ -237182,15 +237182,14 @@ intersection_of: has_primary_input CHEBI:18153 ! ethene
 
 [Term]
 id: GO:0042458
-name: nopaline catabolic process to proline
+name: obsolete nopaline catabolic process to proline
 namespace: biological_process
-def: "The chemical reactions and pathways resulting in the breakdown of nopaline into other compounds, including proline." [GOC:go_curators]
+def: "OBSOLETE. The chemical reactions and pathways resulting in the breakdown of nopaline into other compounds, including proline." [GOC:go_curators]
+comment: The reason for obsoletion is that this term represents a molecular function.
 synonym: "nopaline breakdown to proline" EXACT []
 synonym: "nopaline degradation to proline" EXACT []
-xref: MetaCyc:NOPALINEDEG-PWY
-intersection_of: GO:0009056 ! catabolic process
-intersection_of: has_primary_input CHEBI:58074 ! D-nopalinate(1-)
-intersection_of: has_primary_output CHEBI:32871 ! prolinate
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28389" xsd:anyURI
+is_obsolete: true
 
 [Term]
 id: GO:0042459
@@ -277214,12 +277213,13 @@ intersection_of: has_primary_input_or_output CHEBI:29748 ! chorismate(2-)
 
 [Term]
 id: GO:0046418
-name: nopaline metabolic process
+name: obsolete nopaline metabolic process
 namespace: biological_process
-def: "The chemical reactions and pathways involving nopaline, (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative." [GOC:ai]
+def: "OBSOLETE. The chemical reactions and pathways involving nopaline, (N-(I-carboxy-4-guanidinobutyl)glutamic acid), a rare amino-acid derivative." [GOC:ai]
+comment: The reason for obsoletion is that this term represents a molecular function.
 synonym: "nopaline metabolism" EXACT []
-intersection_of: GO:0008152 ! metabolic process
-intersection_of: has_primary_input_or_output CHEBI:58074 ! D-nopalinate(1-)
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28389" xsd:anyURI
+is_obsolete: true
 
 [Term]
 id: GO:0046419