Merge pull request #29417 from geneontology/issue-28816

Obsoleted 2 MFs; fixes #28816.

src/ontology/go-edit.obo

@@ -85768,6 +85768,7 @@ namespace: molecular_function
 def: "Catalysis of the reaction: a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 2-acyl-sn-glycero-3-phosphocholine + a fatty acid + H+." [RHEA:18689]
 subset: goslim_chembl
 synonym: "phosphatidylcholine 1-acylhydrolase activity" EXACT []
+synonym: "phosphatidylserine 1-acylhydrolase activity" NARROW []
 xref: EC:3.1.1.32 {source="skos:exactMatch"}
 xref: MetaCyc:PHOSPHOLIPASE-A1-RXN
 xref: RHEA:18689 {source="skos:exactMatch"}
@@ -127608,7 +127609,7 @@ def: "OBSOLETE. Catalysis of the reaction: phosphatidylcholine + H2O = 2-acylgly
 comment: This term was made obsolete because the definition does not match the term name.
 synonym: "phosphatidylserine-specific phospholipase A1 activity" EXACT []
 is_obsolete: true
-consider: GO:0052739
+consider: GO:0008970
 
 [Term]
 id: GO:0017064
@@ -237004,6 +237005,7 @@ id: GO:0042409
 name: caffeoyl-CoA O-methyltransferase activity
 namespace: molecular_function
 def: "Catalysis of the reaction: S-adenosyl-L-methionine + caffeoyl-CoA = S-adenosyl-L-homocysteine + feruloyl-CoA." [EC:2.1.1.104]
+synonym: "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" EXACT []
 synonym: "caffeoyl coenzyme A methyltransferase activity" EXACT []
 synonym: "caffeoyl-CoA 3-O-methyltransferase activity" EXACT []
 synonym: "S-adenosyl-L-methionine:caffeoyl-CoA 3-O-methyltransferase activity" RELATED [EC:2.1.1.104]
@@ -338583,13 +338585,14 @@ is_a: GO:0016903 ! oxidoreductase activity, acting on the aldehyde or oxo group
 
 [Term]
 id: GO:0052739
-name: phosphatidylserine 1-acylhydrolase activity
+name: obsolete phosphatidylserine 1-acylhydrolase activity
 namespace: molecular_function
-def: "Catalysis of the reaction: phosphatidylserine + H2O = 2-acyl-sn-glycero-3-phosphoserine + fatty acid." [KEGG_REACTION:R04034]
-synonym: "phosphatidylserine-specific phospholipase A1 activity" BROAD [EC:3.1.1.32]
-xref: EC:3.1.1.32 {source="skos:broadMatch"}
+def: "OBSOLETE. Catalysis of the reaction: phosphatidylserine + H2O = 2-acyl-sn-glycero-3-phosphoserine + fatty acid." [KEGG_REACTION:R04034]
+comment: The reason for obsoletion is that this molecular function is equivalent to phospholipase A1 activity.
 xref: KEGG_REACTION:R04034
-is_a: GO:0004620 ! phospholipase activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28816" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0008970
 
 [Term]
 id: GO:0052740
@@ -400264,10 +400267,13 @@ creation_date: 2009-04-13T04:17:50Z
 
 [Term]
 id: GO:0080076
-name: caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity
+name: obsolete caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity
 namespace: molecular_function
-def: "Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a caffeoyl CoA molecule." [PMID:19077165]
-is_a: GO:0008171 ! O-methyltransferase activity
+def: "OBSOLETE. Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a caffeoyl CoA molecule." [PMID:19077165]
+comment: The reason for obsoletion is that this molecular function is equivalent to affeoyl-CoA O-methyltransferase activity.
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28816" xsd:anyURI
+is_obsolete: true
+replaced_by: GO:0042409
 created_by: dhl
 creation_date: 2009-04-14T03:55:49Z